CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = G76S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp376G76SG894SnonsynGgcAgc75175112945-2947

Details of the mutation G76S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp376G76SGgcAgc751751All0.000144
ORF1ab/nsp376G76SGgcAgc182182B.1.6210.01611
ORF1ab/nsp376G76SGgcAgc108108B.1.1.70.000097
ORF1ab/nsp376G76SGgcAgc5454AY.1030.000335
ORF1ab/nsp376G76SGgcAgc4141AY.440.00025
ORF1ab/nsp376G76SGgcAgc3232B.10.000293
ORF1ab/nsp376G76SGgcAgc3232B.1.177.160.021262
ORF1ab/nsp376G76SGgcAgc2626AY.40.00004
ORF1ab/nsp376G76SGgcAgc2525B.1.1770.000329
ORF1ab/nsp376G76SGgcAgc2424B.1.1940.96
ORF1ab/nsp376G76SGgcAgc2323B.1.20.000203
ORF1ab/nsp376G76SGgcAgc1818AY.240.007759
ORF1ab/nsp376G76SGgcAgc1616AY.200.000622
ORF1ab/nsp376G76SGgcAgc1616B.1.617.20.00006
ORF1ab/nsp376G76SGgcAgc1010B.1.110.11
ORF1ab/nsp376G76SGgcAgc99AY.390.000222
ORF1ab/nsp376G76SGgcAgc99AY.60.00037
ORF1ab/nsp376G76SGgcAgc99P.10.000142
ORF1ab/nsp376G76SGgcAgc77C.36.30.003971
ORF1ab/nsp376G76SGgcAgc66AY.250.000036
ORF1ab/nsp376G76SGgcAgc66AY.30.00006
ORF1ab/nsp376G76SGgcAgc55AY.230.000349
ORF1ab/nsp376G76SGgcAgc55AY.430.000022
ORF1ab/nsp376G76SGgcAgc55B.1.177.80.003762
ORF1ab/nsp376G76SGgcAgc44B.1.10.000073
ORF1ab/nsp376G76SGgcAgc44B.1.1.5190.000159
ORF1ab/nsp376G76SGgcAgc44B.1.4740.007605
ORF1ab/nsp376G76SGgcAgc33AY.590.001589
ORF1ab/nsp376G76SGgcAgc33AY.99.20.000276
ORF1ab/nsp376G76SGgcAgc22AD.20.000438
ORF1ab/nsp376G76SGgcAgc22AY.20.000712
ORF1ab/nsp376G76SGgcAgc22AY.720.002721
ORF1ab/nsp376G76SGgcAgc22B0.000256
ORF1ab/nsp376G76SGgcAgc22B.1.2350.005038
ORF1ab/nsp376G76SGgcAgc22B.1.3510.000059
ORF1ab/nsp376G76SGgcAgc22B.1.4290.000047
ORF1ab/nsp376G76SGgcAgc22B.1.4690.00722
ORF1ab/nsp376G76SGgcAgc22B.1.5260.000047
ORF1ab/nsp376G76SGgcAgc22B.1.6230.001073
ORF1ab/nsp376G76SGgcAgc22P.20.000373
ORF1ab/nsp376G76SGgcAgc22Q.80.00033
ORF1ab/nsp376G76SGgcAgc110.055556
ORF1ab/nsp376G76SGgcAgc11A0.000387
ORF1ab/nsp376G76SGgcAgc11AY.100.00053
ORF1ab/nsp376G76SGgcAgc11AY.1110.000183
ORF1ab/nsp376G76SGgcAgc11AY.1140.000231
ORF1ab/nsp376G76SGgcAgc11AY.1190.000035
ORF1ab/nsp376G76SGgcAgc11AY.1200.000037
ORF1ab/nsp376G76SGgcAgc11AY.1210.000135
ORF1ab/nsp376G76SGgcAgc11AY.150.002222
ORF1ab/nsp376G76SGgcAgc11AY.290.000016
ORF1ab/nsp376G76SGgcAgc11AY.330.000067
ORF1ab/nsp376G76SGgcAgc11AY.340.000097
ORF1ab/nsp376G76SGgcAgc11AY.460.000104
ORF1ab/nsp376G76SGgcAgc11AY.46.40.000165
ORF1ab/nsp376G76SGgcAgc11AY.470.000031
ORF1ab/nsp376G76SGgcAgc11AY.710.000475
ORF1ab/nsp376G76SGgcAgc11AY.75.10.00018
ORF1ab/nsp376G76SGgcAgc11AY.9.10.000084
ORF1ab/nsp376G76SGgcAgc11AY.910.00073
ORF1ab/nsp376G76SGgcAgc11AZ.20.000821
ORF1ab/nsp376G76SGgcAgc11B.1.1.1380.006061
ORF1ab/nsp376G76SGgcAgc11B.1.1.1800.010753
ORF1ab/nsp376G76SGgcAgc11B.1.1.2140.000055
ORF1ab/nsp376G76SGgcAgc11B.1.1.4200.001006
ORF1ab/nsp376G76SGgcAgc11B.1.1.4340.000349
ORF1ab/nsp376G76SGgcAgc11B.1.1.500.000679
ORF1ab/nsp376G76SGgcAgc11B.1.1.540.003021
ORF1ab/nsp376G76SGgcAgc11B.1.1260.001276
ORF1ab/nsp376G76SGgcAgc11B.1.177.40.000211
ORF1ab/nsp376G76SGgcAgc11B.1.177.600.000218
ORF1ab/nsp376G76SGgcAgc11B.1.2580.000067
ORF1ab/nsp376G76SGgcAgc11B.1.3330.010526
ORF1ab/nsp376G76SGgcAgc11B.1.360.000146
ORF1ab/nsp376G76SGgcAgc11B.1.4000.000429
ORF1ab/nsp376G76SGgcAgc11B.1.5070.011236
ORF1ab/nsp376G76SGgcAgc11B.1.5950.000261
ORF1ab/nsp376G76SGgcAgc11B.1.5960.000087
ORF1ab/nsp376G76SGgcAgc11B.1.6090.000479
ORF1ab/nsp376G76SGgcAgc11B.1.619.10.000641
ORF1ab/nsp376G76SGgcAgc11B.1.621.10.000506
ORF1ab/nsp376G76SGgcAgc11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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