CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = G551G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3551G551GG1369GsynggAggG5084320.8503944370-4372
ORF1ab/nsp3551G551GG1369GsynggAggC508640.1259844370-4372
ORF1ab/nsp3551G551GG1369GsynggAggT508120.0236224370-4372

Details of the mutation G551G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3551G551GggAggG432508All0.000083
ORF1ab/nsp3551G551GggAggC64508All0.000012
ORF1ab/nsp3551G551GggAggT12508All0.000002
ORF1ab/nsp3551G551GggAggG184184B.1.1.3060.080666
ORF1ab/nsp3551G551GggAggG3251B.1.1.70.000029
ORF1ab/nsp3551G551GggAggC1951B.1.1.70.000017
ORF1ab/nsp3551G551GggAggG3134B.1.617.20.000117
ORF1ab/nsp3551G551GggAggC234B.1.617.20.000008
ORF1ab/nsp3551G551GggAggT134B.1.617.20.000004
ORF1ab/nsp3551G551GggAggC2626B.1.416.10.040625
ORF1ab/nsp3551G551GggAggG1819B.1.20.000158
ORF1ab/nsp3551G551GggAggC119B.1.20.000009
ORF1ab/nsp3551G551GggAggG1717B.1.1.2910.012621
ORF1ab/nsp3551G551GggAggG1717B.1.5480.607143
ORF1ab/nsp3551G551GggAggG1616AY.1000.000736
ORF1ab/nsp3551G551GggAggG1213AY.1030.000075
ORF1ab/nsp3551G551GggAggC113AY.1030.000006
ORF1ab/nsp3551G551GggAggG1111B.1.1.3400.5
ORF1ab/nsp3551G551GggAggG1010B.1.10.000181
ORF1ab/nsp3551G551GggAggG99B.1.1770.000119
ORF1ab/nsp3551G551GggAggG88AY.1090.005917
ORF1ab/nsp3551G551GggAggG77AY.430.000031
ORF1ab/nsp3551G551GggAggG66AY.1080.006615
ORF1ab/nsp3551G551GggAggG56AY.40.000008
ORF1ab/nsp3551G551GggAggC16AY.40.000002
ORF1ab/nsp3551G551GggAggT66AY.680.001642
ORF1ab/nsp3551G551GggAggG24AY.440.000012
ORF1ab/nsp3551G551GggAggT14AY.440.000006
ORF1ab/nsp3551G551GggAggC14AY.440.000006
ORF1ab/nsp3551G551GggAggG44B.1.177.570.001124
ORF1ab/nsp3551G551GggAggT13AY.250.000006
ORF1ab/nsp3551G551GggAggC13AY.250.000006
ORF1ab/nsp3551G551GggAggG13AY.250.000006
ORF1ab/nsp3551G551GggAggG33B.1.177.430.004431
ORF1ab/nsp3551G551GggAggG23B.1.4270.000101
ORF1ab/nsp3551G551GggAggT13B.1.4270.00005
ORF1ab/nsp3551G551GggAggG23B.1.4290.000047
ORF1ab/nsp3551G551GggAggT13B.1.4290.000024
ORF1ab/nsp3551G551GggAggC22AY.1020.000053
ORF1ab/nsp3551G551GggAggG12AY.1200.000037
ORF1ab/nsp3551G551GggAggC12AY.1200.000037
ORF1ab/nsp3551G551GggAggG22AY.230.000139
ORF1ab/nsp3551G551GggAggG22AY.340.000194
ORF1ab/nsp3551G551GggAggG22AY.370.000632
ORF1ab/nsp3551G551GggAggG12B.10.000009
ORF1ab/nsp3551G551GggAggC12B.10.000009
ORF1ab/nsp3551G551GggAggG22B.1.1.370.000386
ORF1ab/nsp3551G551GggAggG22B.1.177.540.001213
ORF1ab/nsp3551G551GggAggG22B.1.6200.001892
ORF1ab/nsp3551G551GggAggG11A.23.10.000704
ORF1ab/nsp3551G551GggAggG11AE.20.058824
ORF1ab/nsp3551G551GggAggG11AY.260.000028
ORF1ab/nsp3551G551GggAggC11AY.270.000065
ORF1ab/nsp3551G551GggAggC11AY.290.000016
ORF1ab/nsp3551G551GggAggC11AY.300.000396
ORF1ab/nsp3551G551GggAggG11AY.34.10.00051
ORF1ab/nsp3551G551GggAggC11AY.420.00004
ORF1ab/nsp3551G551GggAggC11AY.460.000104
ORF1ab/nsp3551G551GggAggG11AY.46.60.000072
ORF1ab/nsp3551G551GggAggG11AY.5.30.000337
ORF1ab/nsp3551G551GggAggG11AY.610.000105
ORF1ab/nsp3551G551GggAggG11AY.90.000068
ORF1ab/nsp3551G551GggAggG11AY.98.10.000048
ORF1ab/nsp3551G551GggAggT11B0.000128
ORF1ab/nsp3551G551GggAggG11B.1.1.1590.004673
ORF1ab/nsp3551G551GggAggC11B.1.1.2850.006536
ORF1ab/nsp3551G551GggAggG11B.1.1.3710.010417
ORF1ab/nsp3551G551GggAggG11B.1.1.4090.002833
ORF1ab/nsp3551G551GggAggC11B.1.177.690.001484
ORF1ab/nsp3551G551GggAggG11B.1.177.770.000726
ORF1ab/nsp3551G551GggAggG11B.1.2340.000132
ORF1ab/nsp3551G551GggAggC11B.1.36.310.001751
ORF1ab/nsp3551G551GggAggG11B.1.3690.000285
ORF1ab/nsp3551G551GggAggG11B.1.4280.00102
ORF1ab/nsp3551G551GggAggG11B.1.5030.002488
ORF1ab/nsp3551G551GggAggG11B.1.5250.000113
ORF1ab/nsp3551G551GggAggG11B.1.6370.000073
ORF1ab/nsp3551G551GggAggG11P.10.000016
ORF1ab/nsp3551G551GggAggG11P.1.100.000269

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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