CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = G282V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3282G282VG1100VnonsyngGtgTt77477413563-3565

Details of the mutation G282V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3282G282VgGtgTt774774All0.000148
ORF1ab/nsp3282G282VgGtgTt337337D.20.025289
ORF1ab/nsp3282G282VgGtgTt8080B.1.1770.001053
ORF1ab/nsp3282G282VgGtgTt5858B.1.1.70.000052
ORF1ab/nsp3282G282VgGtgTt3535B.10.000321
ORF1ab/nsp3282G282VgGtgTt2020B.1.10.000363
ORF1ab/nsp3282G282VgGtgTt1616B.1.4340.842105
ORF1ab/nsp3282G282VgGtgTt1414AY.40.000022
ORF1ab/nsp3282G282VgGtgTt1313AY.430.000058
ORF1ab/nsp3282G282VgGtgTt1010B.1.1.2790.011211
ORF1ab/nsp3282G282VgGtgTt1010B.1.177.260.06993
ORF1ab/nsp3282G282VgGtgTt88B.1.1600.00025
ORF1ab/nsp3282G282VgGtgTt77B.1.177.250.104478
ORF1ab/nsp3282G282VgGtgTt77B.4.50.083333
ORF1ab/nsp3282G282VgGtgTt66R.10.00054
ORF1ab/nsp3282G282VgGtgTt55B.1.177.810.000947
ORF1ab/nsp3282G282VgGtgTt55B.1.177.870.003639
ORF1ab/nsp3282G282VgGtgTt55B.1.20.000044
ORF1ab/nsp3282G282VgGtgTt55B.1.617.20.000019
ORF1ab/nsp3282G282VgGtgTt55B.310.018657
ORF1ab/nsp3282G282VgGtgTt44A.10.001127
ORF1ab/nsp3282G282VgGtgTt44A.20.002647
ORF1ab/nsp3282G282VgGtgTt44B0.000511
ORF1ab/nsp3282G282VgGtgTt44B.1.2580.000266
ORF1ab/nsp3282G282VgGtgTt44B.1.258.170.000416
ORF1ab/nsp3282G282VgGtgTt44B.1.3510.000119
ORF1ab/nsp3282G282VgGtgTt33A0.001161
ORF1ab/nsp3282G282VgGtgTt33A.2.20.005068
ORF1ab/nsp3282G282VgGtgTt33AY.1020.00008
ORF1ab/nsp3282G282VgGtgTt33AY.30.00003
ORF1ab/nsp3282G282VgGtgTt33AY.680.000821
ORF1ab/nsp3282G282VgGtgTt33B.1.1.4200.003018
ORF1ab/nsp3282G282VgGtgTt33B.1.5960.000261
ORF1ab/nsp3282G282VgGtgTt33B.290.010526
ORF1ab/nsp3282G282VgGtgTt33B.60.00273
ORF1ab/nsp3282G282VgGtgTt22AY.1190.000071
ORF1ab/nsp3282G282VgGtgTt22AY.60.000082
ORF1ab/nsp3282G282VgGtgTt22B.1.1.5190.000079
ORF1ab/nsp3282G282VgGtgTt22B.1.1570.00597
ORF1ab/nsp3282G282VgGtgTt22B.1.160.280.005848
ORF1ab/nsp3282G282VgGtgTt22B.1.177.170.001642
ORF1ab/nsp3282G282VgGtgTt22B.1.177.440.001038
ORF1ab/nsp3282G282VgGtgTt22B.1.177.60.001953
ORF1ab/nsp3282G282VgGtgTt22B.1.177.70.00033
ORF1ab/nsp3282G282VgGtgTt22B.1.2210.000142
ORF1ab/nsp3282G282VgGtgTt22B.1.230.012121
ORF1ab/nsp3282G282VgGtgTt22B.1.2430.000139
ORF1ab/nsp3282G282VgGtgTt22B.1.3690.00057
ORF1ab/nsp3282G282VgGtgTt22B.30.001661
ORF1ab/nsp3282G282VgGtgTt22B.400.000729
ORF1ab/nsp3282G282VgGtgTt22P.10.000032
ORF1ab/nsp3282G282VgGtgTt11AY.100.00053
ORF1ab/nsp3282G282VgGtgTt11AY.1200.000037
ORF1ab/nsp3282G282VgGtgTt11AY.230.00007
ORF1ab/nsp3282G282VgGtgTt11AY.290.000016
ORF1ab/nsp3282G282VgGtgTt11AY.4.40.000409
ORF1ab/nsp3282G282VgGtgTt11AY.420.00004
ORF1ab/nsp3282G282VgGtgTt11AY.440.000006
ORF1ab/nsp3282G282VgGtgTt11AY.450.000122
ORF1ab/nsp3282G282VgGtgTt11AY.460.000104
ORF1ab/nsp3282G282VgGtgTt11AY.5.30.000337
ORF1ab/nsp3282G282VgGtgTt11AY.550.000917
ORF1ab/nsp3282G282VgGtgTt11AY.70.000196
ORF1ab/nsp3282G282VgGtgTt11AY.820.001357
ORF1ab/nsp3282G282VgGtgTt11AY.920.000287
ORF1ab/nsp3282G282VgGtgTt11B.1.1.1440.028571
ORF1ab/nsp3282G282VgGtgTt11B.1.1.280.000311
ORF1ab/nsp3282G282VgGtgTt11B.1.1.370.000193
ORF1ab/nsp3282G282VgGtgTt11B.1.1.4160.000905
ORF1ab/nsp3282G282VgGtgTt11B.1.1.700.000341
ORF1ab/nsp3282G282VgGtgTt11B.1.1050.009615
ORF1ab/nsp3282G282VgGtgTt11B.1.130.002375
ORF1ab/nsp3282G282VgGtgTt11B.1.1390.000733
ORF1ab/nsp3282G282VgGtgTt11B.1.160.70.002079
ORF1ab/nsp3282G282VgGtgTt11B.1.177.180.00116
ORF1ab/nsp3282G282VgGtgTt11B.1.177.530.002392
ORF1ab/nsp3282G282VgGtgTt11B.1.177.540.000606
ORF1ab/nsp3282G282VgGtgTt11B.1.177.570.000281
ORF1ab/nsp3282G282VgGtgTt11B.1.2360.002053
ORF1ab/nsp3282G282VgGtgTt11B.1.3110.000275
ORF1ab/nsp3282G282VgGtgTt11B.1.3500.002933
ORF1ab/nsp3282G282VgGtgTt11B.1.3560.001727
ORF1ab/nsp3282G282VgGtgTt11B.1.360.000146
ORF1ab/nsp3282G282VgGtgTt11B.1.36.100.004785
ORF1ab/nsp3282G282VgGtgTt11B.1.36.280.005747
ORF1ab/nsp3282G282VgGtgTt11B.1.3910.001127
ORF1ab/nsp3282G282VgGtgTt11B.1.4160.001269
ORF1ab/nsp3282G282VgGtgTt11B.1.617.10.000129
ORF1ab/nsp3282G282VgGtgTt11B.1.617.30.002985
ORF1ab/nsp3282G282VgGtgTt11B.280.003279
ORF1ab/nsp3282G282VgGtgTt11B.350.007812
ORF1ab/nsp3282G282VgGtgTt11C.36.30.000567
ORF1ab/nsp3282G282VgGtgTt11D.30.005917
ORF1ab/nsp3282G282VgGtgTt11P.1.140.000048
ORF1ab/nsp3282G282VgGtgTt11Q.80.000165
ORF1ab/nsp3282G282VgGtgTt11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.