CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = G282G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3282G282GG1100GsynggTggC1621530.9444443563-3565
ORF1ab/nsp3282G282GG1100GsynggTggA16250.03086423563-3565
ORF1ab/nsp3282G282GG1100GsynggTggG16240.02469143563-3565

Details of the mutation G282G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3282G282GggTggC153162All0.000029
ORF1ab/nsp3282G282GggTggA5162All0.000001
ORF1ab/nsp3282G282GggTggG4162All0.000001
ORF1ab/nsp3282G282GggTggC3535AY.430.000155
ORF1ab/nsp3282G282GggTggC3132AY.30.000308
ORF1ab/nsp3282G282GggTggA132AY.30.00001
ORF1ab/nsp3282G282GggTggC2525B.1.617.20.000094
ORF1ab/nsp3282G282GggTggC1212AY.610.001257
ORF1ab/nsp3282G282GggTggC99AY.40.000014
ORF1ab/nsp3282G282GggTggC77AY.480.003256
ORF1ab/nsp3282G282GggTggC44AY.75.10.000721
ORF1ab/nsp3282G282GggTggC33AY.420.000121
ORF1ab/nsp3282G282GggTggC33B.1.1.70.000003
ORF1ab/nsp3282G282GggTggC22AY.1140.000462
ORF1ab/nsp3282G282GggTggC22AY.260.000057
ORF1ab/nsp3282G282GggTggC22AY.50.000041
ORF1ab/nsp3282G282GggTggC22B.1.1950.01005
ORF1ab/nsp3282G282GggTggC22B.1.20.000018
ORF1ab/nsp3282G282GggTggG11A.20.000662
ORF1ab/nsp3282G282GggTggC11AY.1030.000006
ORF1ab/nsp3282G282GggTggC11AY.1170.000085
ORF1ab/nsp3282G282GggTggC11AY.130.000161
ORF1ab/nsp3282G282GggTggC11AY.16.10.00047
ORF1ab/nsp3282G282GggTggC11AY.290.000016
ORF1ab/nsp3282G282GggTggC11AY.390.000025
ORF1ab/nsp3282G282GggTggC11AY.39.10.00004
ORF1ab/nsp3282G282GggTggG11AY.440.000006
ORF1ab/nsp3282G282GggTggC11AY.540.000095
ORF1ab/nsp3282G282GggTggC11AY.9.20.000037
ORF1ab/nsp3282G282GggTggC11AY.98.10.000048
ORF1ab/nsp3282G282GggTggA11B.10.000009
ORF1ab/nsp3282G282GggTggA11B.1.1.10.000327
ORF1ab/nsp3282G282GggTggG11B.1.1.100.001115
ORF1ab/nsp3282G282GggTggC11B.1.1.3170.000412
ORF1ab/nsp3282G282GggTggA11B.1.177.730.000566
ORF1ab/nsp3282G282GggTggC11B.1.258.170.000104
ORF1ab/nsp3282G282GggTggA11B.1.36.160.001425
ORF1ab/nsp3282G282GggTggC11B.1.5750.000303
ORF1ab/nsp3282G282GggTggG11P.10.000016
ORF1ab/nsp3282G282GggTggC11P.1.90.004808

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.