CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 255 | G255R | G1073R | nonsyn | Gga | Aga | 1718 | 1696 | 0.987194 | 3482-3484 |
ORF1ab/nsp3 | 255 | G255R | G1073R | nonsyn | Gga | Cga | 1718 | 18 | 0.0104773 | 3482-3484 |
ORF1ab/nsp3 | 255 | G255R | G1073R | nonsyn | GgA | AgG | 1718 | 4 | 0.00232829 | 3482-3484 |
Details of the mutation G255R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1696 | 1718 | All | 0.000324 |
ORF1ab/nsp3 | 255 | G255R | Gga | Cga | 18 | 1718 | All | 0.000003 |
ORF1ab/nsp3 | 255 | G255R | GgA | AgG | 4 | 1718 | All | 0.000001 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 462 | 471 | B.1.1.7 | 0.000414 |
ORF1ab/nsp3 | 255 | G255R | Gga | Cga | 9 | 471 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 345 | 345 | B.1.1.50 | 0.234216 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 123 | 124 | AY.4 | 0.000191 |
ORF1ab/nsp3 | 255 | G255R | Gga | Cga | 1 | 124 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 115 | 115 | B.1.2 | 0.001013 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 93 | 93 | B.1.617.2 | 0.00035 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 61 | 61 | B.1.565 | 0.049433 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 39 | 39 | AY.39 | 0.000964 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 36 | 36 | AY.26 | 0.001019 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 28 | 28 | B.1.177.20 | 0.042489 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 23 | 23 | B.1 | 0.000211 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 17 | 19 | AY.102 | 0.000451 |
ORF1ab/nsp3 | 255 | G255R | Gga | Cga | 2 | 19 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 19 | 19 | AY.43 | 0.000084 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 17 | 17 | AY.46.6 | 0.001228 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 16 | 16 | AY.3 | 0.000159 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 15 | 15 | B.1.234 | 0.001979 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 11 | 12 | B.1.1 | 0.0002 |
ORF1ab/nsp3 | 255 | G255R | GgA | AgG | 1 | 12 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 8 | 10 | AY.25 | 0.000048 |
ORF1ab/nsp3 | 255 | G255R | Gga | Cga | 2 | 10 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 4 | 6 | 0.222222 | |
ORF1ab/nsp3 | 255 | G255R | GgA | AgG | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 6 | 6 | AY.76 | 0.028986 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 3 | 6 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 255 | G255R | Gga | Cga | 3 | 6 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 4 | 4 | B.1.320 | 0.004981 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 3 | 3 | B.1.160.27 | 0.045455 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 3 | 3 | B.1.223 | 0.008333 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 3 | 3 | L.3 | 0.010638 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 255 | G255R | GgA | AgG | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.291 | 0.019231 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.309 | 0.047619 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.357 | 0.009524 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.363 | 0.012987 |
ORF1ab/nsp3 | 255 | G255R | Gga | Cga | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.6.1 | 0.026316 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 255 | G255R | Gga | Aga | 1 | 1 | N.3 | 0.005814 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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