CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 251 | G251G | G1069G | syn | ggA | ggG | 533 | 407 | 0.763602 | 3470-3472 |
ORF1ab/nsp3 | 251 | G251G | G1069G | syn | ggA | ggC | 533 | 76 | 0.142589 | 3470-3472 |
ORF1ab/nsp3 | 251 | G251G | G1069G | syn | ggA | ggT | 533 | 50 | 0.0938086 | 3470-3472 |
Details of the mutation G251G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 407 | 533 | All | 0.000078 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 76 | 533 | All | 0.000015 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 50 | 533 | All | 0.00001 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 74 | 79 | B.1.617.2 | 0.000279 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 5 | 79 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 67 | 67 | AY.102 | 0.001776 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 64 | 67 | AY.4 | 0.0001 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 3 | 67 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 17 | 39 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 12 | 39 | B.1.1.7 | 0.000011 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 10 | 39 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 17 | 30 | AY.25 | 0.000102 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 13 | 30 | AY.25 | 0.000078 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 28 | 28 | B.1.1.507 | 0.243478 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 14 | 18 | B.1 | 0.000128 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 3 | 18 | B.1 | 0.000027 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 1 | 18 | B.1 | 0.000009 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 15 | 16 | AY.3 | 0.000149 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 16 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 12 | 12 | AY.98.1 | 0.000581 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 12 | 12 | B.1.9.4 | 0.07362 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 6 | 11 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 5 | 11 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 11 | 11 | B.1.427 | 0.000555 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 7 | 9 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 9 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 9 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 6 | 9 | AY.5 | 0.000124 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 3 | 9 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 5 | 7 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 7 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 1 | 7 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 3 | 6 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 2 | 6 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 6 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 5 | 5 | 0.277778 | |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 4 | 5 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 5 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 5 | 5 | B.4 | 0.011038 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 4 | 4 | B.1.1.254 | 0.044944 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 3 | 4 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 1 | 4 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 3 | 3 | C.29 | 0.1875 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 2 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 2 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.1.458 | 0.041667 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 251 | G251G | ggA | ggG | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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