CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = F1516S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31516F1516SF2334SnonsyntTctCc34310.9117657265-7267
ORF1ab/nsp31516F1516SF2334SnonsyntTCtCT3420.05882357265-7267
ORF1ab/nsp31516F1516SF2334SnonsyntTCtCA3410.02941187265-7267

Details of the mutation F1516S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31516F1516StTctCc3134All0.000006
ORF1ab/nsp31516F1516StTCtCT234All0
ORF1ab/nsp31516F1516StTCtCA134All0
ORF1ab/nsp31516F1516StTctCc2020AY.40.000031
ORF1ab/nsp31516F1516StTctCc220.111111
ORF1ab/nsp31516F1516StTctCc22AY.770.002255
ORF1ab/nsp31516F1516StTCtCT12B.1.1.70.000001
ORF1ab/nsp31516F1516StTctCc12B.1.1.70.000001
ORF1ab/nsp31516F1516StTctCc11AY.430.000004
ORF1ab/nsp31516F1516StTctCc11AY.440.000006
ORF1ab/nsp31516F1516StTCtCA11AY.670.000464
ORF1ab/nsp31516F1516StTctCc11B.1.1.1280.007092
ORF1ab/nsp31516F1516StTCtCT11B.1.20.000009
ORF1ab/nsp31516F1516StTctCc11B.1.4290.000024
ORF1ab/nsp31516F1516StTctCc11B.1.5960.000087
ORF1ab/nsp31516F1516StTctCc11B.1.617.20.000004