CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = F1516L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31516F1516LF2334LnonsynTtcCtc5394970.9220787265-7267
ORF1ab/nsp31516F1516LF2334LnonsynttCttA539300.05565867265-7267
ORF1ab/nsp31516F1516LF2334LnonsynttCttG53990.01669767265-7267
ORF1ab/nsp31516F1516LF2334LnonsynTtCCtT53930.005565867265-7267

Details of the mutation F1516L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31516F1516LTtcCtc497539All0.000095
ORF1ab/nsp31516F1516LttCttA30539All0.000006
ORF1ab/nsp31516F1516LttCttG9539All0.000002
ORF1ab/nsp31516F1516LTtCCtT3539All0.000001
ORF1ab/nsp31516F1516LTtcCtc313313B.1.5880.284804
ORF1ab/nsp31516F1516LTtcCtc4953B.10.000449
ORF1ab/nsp31516F1516LttCttA353B.10.000027
ORF1ab/nsp31516F1516LttCttG153B.10.000009
ORF1ab/nsp31516F1516LTtcCtc4448B.1.20.000387
ORF1ab/nsp31516F1516LttCttA248B.1.20.000018
ORF1ab/nsp31516F1516LTtCCtT248B.1.20.000018
ORF1ab/nsp31516F1516LTtcCtc1926B.1.1.70.000017
ORF1ab/nsp31516F1516LttCttG426B.1.1.70.000004
ORF1ab/nsp31516F1516LttCttA326B.1.1.70.000003
ORF1ab/nsp31516F1516LTtcCtc2626B.1.5950.006785
ORF1ab/nsp31516F1516LTtcCtc911B.1.617.20.000034
ORF1ab/nsp31516F1516LttCttG111B.1.617.20.000004
ORF1ab/nsp31516F1516LttCttA111B.1.617.20.000004
ORF1ab/nsp31516F1516LTtcCtc79AY.40.000011
ORF1ab/nsp31516F1516LttCttA29AY.40.000003
ORF1ab/nsp31516F1516LTtcCtc55AY.540.000477
ORF1ab/nsp31516F1516LttCttA35B.1.5610.001191
ORF1ab/nsp31516F1516LTtcCtc25B.1.5610.000794
ORF1ab/nsp31516F1516LttCttA35P.1.10.000953
ORF1ab/nsp31516F1516LttCttG25P.1.10.000635
ORF1ab/nsp31516F1516LTtcCtc44B.1.5670.013333
ORF1ab/nsp31516F1516LTtcCtc23AY.440.000012
ORF1ab/nsp31516F1516LttCttA13AY.440.000006
ORF1ab/nsp31516F1516LTtcCtc33B.1.1.3760.017857
ORF1ab/nsp31516F1516LttCttA220.111111
ORF1ab/nsp31516F1516LTtcCtc22B.1.1.2770.001517
ORF1ab/nsp31516F1516LTtcCtc12B.1.5960.000087
ORF1ab/nsp31516F1516LttCttA12B.1.5960.000087
ORF1ab/nsp31516F1516LTtcCtc11AY.270.000065
ORF1ab/nsp31516F1516LTtcCtc11AY.290.000016
ORF1ab/nsp31516F1516LTtcCtc11AY.360.000148
ORF1ab/nsp31516F1516LttCttA11AY.390.000025
ORF1ab/nsp31516F1516LTtcCtc11AY.430.000004
ORF1ab/nsp31516F1516LttCttA11AY.490.003195
ORF1ab/nsp31516F1516LttCttA11B.1.10.000018
ORF1ab/nsp31516F1516LTtcCtc11B.1.1.3060.000438
ORF1ab/nsp31516F1516LTtcCtc11B.1.1.3680.003086
ORF1ab/nsp31516F1516LTtcCtc11B.1.1.3770.001381
ORF1ab/nsp31516F1516LttCttA11B.1.1600.000031
ORF1ab/nsp31516F1516LttCttG11B.1.1770.000013
ORF1ab/nsp31516F1516LttCttA11B.1.177.120.000152
ORF1ab/nsp31516F1516LTtcCtc11B.1.177.70.000165
ORF1ab/nsp31516F1516LttCttA11B.1.177.750.001041
ORF1ab/nsp31516F1516LttCttA11B.1.2580.000067
ORF1ab/nsp31516F1516LTtcCtc11B.1.3510.00003
ORF1ab/nsp31516F1516LTtcCtc11B.1.360.000146
ORF1ab/nsp31516F1516LttCttA11B.1.36.350.002604
ORF1ab/nsp31516F1516LTtcCtc11B.1.5260.000024
ORF1ab/nsp31516F1516LTtCCtT11B.1.617.10.000129
ORF1ab/nsp31516F1516LttCttA11C.160.00106