CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = F1405L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31405F1405LF2223LnonsynTttCtt52450.8653856932-6934
ORF1ab/nsp31405F1405LF2223LnonsynttTttA5240.07692316932-6934
ORF1ab/nsp31405F1405LF2223LnonsynttTttG5220.03846156932-6934
ORF1ab/nsp31405F1405LF2223LnonsynTtTCtA5210.01923086932-6934

Details of the mutation F1405L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31405F1405LTttCtt4552All0.000009
ORF1ab/nsp31405F1405LttTttA452All0.000001
ORF1ab/nsp31405F1405LttTttG252All0
ORF1ab/nsp31405F1405LTtTCtA152All0
ORF1ab/nsp31405F1405LTttCtt1515AY.40.000023
ORF1ab/nsp31405F1405LTttCtt88AY.30.00008
ORF1ab/nsp31405F1405LTttCtt44B.10.000037
ORF1ab/nsp31405F1405LTttCtt34B.1.1.70.000003
ORF1ab/nsp31405F1405LttTttG14B.1.1.70.000001
ORF1ab/nsp31405F1405LTttCtt23AY.430.000009
ORF1ab/nsp31405F1405LTtTCtA13AY.430.000004
ORF1ab/nsp31405F1405LTttCtt22AY.1030.000012
ORF1ab/nsp31405F1405LTttCtt22AY.420.00008
ORF1ab/nsp31405F1405LTttCtt22B.1.1.1530.002191
ORF1ab/nsp31405F1405LttTttA12B.1.617.20.000004
ORF1ab/nsp31405F1405LTttCtt12B.1.617.20.000004
ORF1ab/nsp31405F1405LTttCtt22P.10.000032
ORF1ab/nsp31405F1405LttTttG11AY.1000.000046
ORF1ab/nsp31405F1405LttTttA11AY.340.000097
ORF1ab/nsp31405F1405LTttCtt11AY.440.000006
ORF1ab/nsp31405F1405LTttCtt11AY.460.000104
ORF1ab/nsp31405F1405LTttCtt11B.1.10.000018
ORF1ab/nsp31405F1405LttTttA11B.1.1.390.00051
ORF1ab/nsp31405F1405LTttCtt11B.1.1770.000013
ORF1ab/nsp31405F1405LttTttA11B.1.20.000009