CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = F1107L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31107F1107LF1925LnonsynTtcCtc1361070.7867656038-6040
ORF1ab/nsp31107F1107LF1925LnonsynttCttA136280.2058826038-6040
ORF1ab/nsp31107F1107LF1925LnonsynttCttG13610.007352946038-6040

Details of the mutation F1107L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31107F1107LTtcCtc107136All0.00002
ORF1ab/nsp31107F1107LttCttA28136All0.000005
ORF1ab/nsp31107F1107LttCttG1136All0
ORF1ab/nsp31107F1107LTtcCtc6969AY.620.030065
ORF1ab/nsp31107F1107LTtcCtc1616B.1.1.70.000014
ORF1ab/nsp31107F1107LttCttA1515AY.1030.000093
ORF1ab/nsp31107F1107LTtcCtc89B.1.617.20.00003
ORF1ab/nsp31107F1107LttCttG19B.1.617.20.000004
ORF1ab/nsp31107F1107LttCttA440.222222
ORF1ab/nsp31107F1107LttCttA33B.10.000027
ORF1ab/nsp31107F1107LttCttA12B.1.1770.000013
ORF1ab/nsp31107F1107LTtcCtc12B.1.1770.000013
ORF1ab/nsp31107F1107LttCttA11AY.250.000006
ORF1ab/nsp31107F1107LTtcCtc11AY.30.00001
ORF1ab/nsp31107F1107LTtcCtc11AY.50.000021
ORF1ab/nsp31107F1107LttCttA11AY.5.30.000337
ORF1ab/nsp31107F1107LTtcCtc11AY.590.00053
ORF1ab/nsp31107F1107LTtcCtc11AY.670.000464
ORF1ab/nsp31107F1107LTtcCtc11B.1.1.2740.005051
ORF1ab/nsp31107F1107LTtcCtc11B.1.1.370.000193
ORF1ab/nsp31107F1107LTtcCtc11B.1.1.390.00051
ORF1ab/nsp31107F1107LTtcCtc11B.1.1100.004525
ORF1ab/nsp31107F1107LTtcCtc11B.1.2210.000071
ORF1ab/nsp31107F1107LttCttA11B.1.3980.002976
ORF1ab/nsp31107F1107LTtcCtc11B.1.4160.001269
ORF1ab/nsp31107F1107LttCttA11B.1.6090.000479
ORF1ab/nsp31107F1107LTtcCtc11D.20.000075
ORF1ab/nsp31107F1107LttCttA11P.1.10.000318
ORF1ab/nsp31107F1107LTtcCtc11P.1.140.000048
ORF1ab/nsp31107F1107LTtcCtc11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.