CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = F1107C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31107F1107CF1925CnonsyntTctGc55530.9636366038-6040
ORF1ab/nsp31107F1107CF1925CnonsyntTCtGT5520.03636366038-6040

Details of the mutation F1107C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31107F1107CtTctGc5355All0.00001
ORF1ab/nsp31107F1107CtTCtGT255All0
ORF1ab/nsp31107F1107CtTctGc2525AY.1110.004579
ORF1ab/nsp31107F1107CtTctGc99B.1.4270.000454
ORF1ab/nsp31107F1107CtTctGc44AY.1030.000025
ORF1ab/nsp31107F1107CtTctGc23B.1.617.20.000008
ORF1ab/nsp31107F1107CtTCtGT13B.1.617.20.000004
ORF1ab/nsp31107F1107CtTctGc220.111111
ORF1ab/nsp31107F1107CtTctGc22B.1.1.70.000002
ORF1ab/nsp31107F1107CtTctGc11AY.1170.000085
ORF1ab/nsp31107F1107CtTctGc11AY.250.000006
ORF1ab/nsp31107F1107CtTctGc11AY.40.000002
ORF1ab/nsp31107F1107CtTctGc11AY.4.20.000022
ORF1ab/nsp31107F1107CtTctGc11AY.420.00004
ORF1ab/nsp31107F1107CtTctGc11AY.7.10.000113
ORF1ab/nsp31107F1107CtTCtGT11AY.840.000437
ORF1ab/nsp31107F1107CtTctGc11B.1.1.2970.002237
ORF1ab/nsp31107F1107CtTctGc11B.1.160.200.008929
ORF1ab/nsp31107F1107CtTctGc11B.1.20.000009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.