CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = E95G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp395E95GE913GnonsyngAggGg2762750.9963773002-3004
ORF1ab/nsp395E95GE913GnonsyngAGgGT27610.003623193002-3004

Details of the mutation E95G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp395E95GgAggGg275276All0.000053
ORF1ab/nsp395E95GgAGgGT1276All0
ORF1ab/nsp395E95GgAggGg4748B.1.1.70.000042
ORF1ab/nsp395E95GgAGgGT148B.1.1.70.000001
ORF1ab/nsp395E95GgAggGg3535AY.440.000213
ORF1ab/nsp395E95GgAggGg3232B.1.4290.000753
ORF1ab/nsp395E95GgAggGg2929AY.250.000174
ORF1ab/nsp395E95GgAggGg2020B.1.617.20.000075
ORF1ab/nsp395E95GgAggGg1111AY.40.000017
ORF1ab/nsp395E95GgAggGg1010AY.30.000099
ORF1ab/nsp395E95GgAggGg99AY.200.00035
ORF1ab/nsp395E95GgAggGg77AY.430.000031
ORF1ab/nsp395E95GgAggGg77C.360.006375
ORF1ab/nsp395E95GgAggGg66AY.4.20.00013
ORF1ab/nsp395E95GgAggGg44AY.100.00212
ORF1ab/nsp395E95GgAggGg44B.1.1.4320.005063
ORF1ab/nsp395E95GgAggGg33AY.260.000085
ORF1ab/nsp395E95GgAggGg33B.1.1.2140.000166
ORF1ab/nsp395E95GgAggGg33B.1.1600.000094
ORF1ab/nsp395E95GgAggGg33B.1.20.000026
ORF1ab/nsp395E95GgAggGg220.111111
ORF1ab/nsp395E95GgAggGg22AY.1190.000071
ORF1ab/nsp395E95GgAggGg22AY.130.000322
ORF1ab/nsp395E95GgAggGg22AY.290.000032
ORF1ab/nsp395E95GgAggGg22AY.3.10.000171
ORF1ab/nsp395E95GgAggGg22AY.390.000049
ORF1ab/nsp395E95GgAggGg22AY.50.000041
ORF1ab/nsp395E95GgAggGg22AY.610.00021
ORF1ab/nsp395E95GgAggGg22B0.000256
ORF1ab/nsp395E95GgAggGg22B.1.1.280.000622
ORF1ab/nsp395E95GgAggGg22B.1.5260.000047
ORF1ab/nsp395E95GgAggGg22P.10.000032
ORF1ab/nsp395E95GgAggGg11AY.1030.000006
ORF1ab/nsp395E95GgAggGg11AY.230.00007
ORF1ab/nsp395E95GgAggGg11AY.4.2.10.000149
ORF1ab/nsp395E95GgAggGg11AY.60.000041
ORF1ab/nsp395E95GgAggGg11AY.740.000116
ORF1ab/nsp395E95GgAggGg11B.10.000009
ORF1ab/nsp395E95GgAggGg11B.1.10.000018
ORF1ab/nsp395E95GgAggGg11B.1.1.3060.000438
ORF1ab/nsp395E95GgAggGg11B.1.1.330.000421
ORF1ab/nsp395E95GgAggGg11B.1.160.200.008929
ORF1ab/nsp395E95GgAggGg11B.1.1770.000013
ORF1ab/nsp395E95GgAggGg11B.1.177.320.00135
ORF1ab/nsp395E95GgAggGg11B.1.177.70.000165
ORF1ab/nsp395E95GgAggGg11B.1.360.000146
ORF1ab/nsp395E95GgAggGg11B.1.4560.003268
ORF1ab/nsp395E95GgAggGg11C.2.10.006667
ORF1ab/nsp395E95GgAggGg11C.370.000116
ORF1ab/nsp395E95GgAggGg11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.