CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = E815D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3815E815DE1633DnonsyngaGgaT31859318520.999785162-5164
ORF1ab/nsp3815E815DE1633DnonsyngaGgaC3185970.0002197185162-5164

Details of the mutation E815D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3815E815DgaGgaT3185231859All0.006092
ORF1ab/nsp3815E815DgaGgaC731859All0.000001
ORF1ab/nsp3815E815DgaGgaT3114131141AY.470.968646
ORF1ab/nsp3815E815DgaGgaT327327B.1.617.20.001231
ORF1ab/nsp3815E815DgaGgaT6365B.1.1.70.000056
ORF1ab/nsp3815E815DgaGgaC265B.1.1.70.000002
ORF1ab/nsp3815E815DgaGgaT2425AY.40.000037
ORF1ab/nsp3815E815DgaGgaC125AY.40.000002
ORF1ab/nsp3815E815DgaGgaT2525AY.610.002619
ORF1ab/nsp3815E815DgaGgaT2525B.1.1.2220.0051
ORF1ab/nsp3815E815DgaGgaT2424AY.430.000106
ORF1ab/nsp3815E815DgaGgaT2222AY.650.011727
ORF1ab/nsp3815E815DgaGgaT1717AY.30.000169
ORF1ab/nsp3815E815DgaGgaT1515AY.400.014465
ORF1ab/nsp3815E815DgaGgaT1313AY.250.000078
ORF1ab/nsp3815E815DgaGgaT99AY.9.10.000754
ORF1ab/nsp3815E815DgaGgaT89B.10.000073
ORF1ab/nsp3815E815DgaGgaC19B.10.000009
ORF1ab/nsp3815E815DgaGgaT88AY.75.10.001442
ORF1ab/nsp3815E815DgaGgaT77AY.1090.005178
ORF1ab/nsp3815E815DgaGgaT77AY.120.20.008997
ORF1ab/nsp3815E815DgaGgaT77AY.540.000667
ORF1ab/nsp3815E815DgaGgaT77B0.000895
ORF1ab/nsp3815E815DgaGgaT77B.1.36.80.007
ORF1ab/nsp3815E815DgaGgaT55AY.260.000142
ORF1ab/nsp3815E815DgaGgaT55AY.300.001979
ORF1ab/nsp3815E815DgaGgaT55AY.620.002179
ORF1ab/nsp3815E815DgaGgaT55B.1.1770.000066
ORF1ab/nsp3815E815DgaGgaT55B.1.20.000044
ORF1ab/nsp3815E815DgaGgaT44AY.1030.000025
ORF1ab/nsp3815E815DgaGgaT44AY.130.000644
ORF1ab/nsp3815E815DgaGgaT44AY.4.20.000087
ORF1ab/nsp3815E815DgaGgaT44AY.440.000024
ORF1ab/nsp3815E815DgaGgaT33AY.450.000365
ORF1ab/nsp3815E815DgaGgaT33AY.750.000168
ORF1ab/nsp3815E815DgaGgaT22AY.100.00106
ORF1ab/nsp3815E815DgaGgaT22AY.1140.000462
ORF1ab/nsp3815E815DgaGgaT22AY.230.000139
ORF1ab/nsp3815E815DgaGgaT22AY.330.000134
ORF1ab/nsp3815E815DgaGgaT22AY.530.000575
ORF1ab/nsp3815E815DgaGgaT22B.1.1.3980.006452
ORF1ab/nsp3815E815DgaGgaT22Q.10.000253
ORF1ab/nsp3815E815DgaGgaT11AY.116.10.000311
ORF1ab/nsp3815E815DgaGgaT11AY.1170.000085
ORF1ab/nsp3815E815DgaGgaT11AY.1200.000037
ORF1ab/nsp3815E815DgaGgaT11AY.16.10.00047
ORF1ab/nsp3815E815DgaGgaT11AY.3.10.000085
ORF1ab/nsp3815E815DgaGgaT11AY.34.10.00051
ORF1ab/nsp3815E815DgaGgaT11AY.350.000233
ORF1ab/nsp3815E815DgaGgaT11AY.420.00004
ORF1ab/nsp3815E815DgaGgaT11AY.46.20.000635
ORF1ab/nsp3815E815DgaGgaT11AY.5.40.000277
ORF1ab/nsp3815E815DgaGgaT11AY.590.00053
ORF1ab/nsp3815E815DgaGgaC11AY.60.000041
ORF1ab/nsp3815E815DgaGgaT11AY.670.000464
ORF1ab/nsp3815E815DgaGgaT11AY.680.000274
ORF1ab/nsp3815E815DgaGgaT11AY.710.000475
ORF1ab/nsp3815E815DgaGgaT11AY.90.000068
ORF1ab/nsp3815E815DgaGgaT11AY.9.20.000037
ORF1ab/nsp3815E815DgaGgaT11AY.930.000273
ORF1ab/nsp3815E815DgaGgaT11AY.980.000079
ORF1ab/nsp3815E815DgaGgaT11B.1.10.000018
ORF1ab/nsp3815E815DgaGgaT11B.1.1.10.000327
ORF1ab/nsp3815E815DgaGgaT11B.1.1.1740.003378
ORF1ab/nsp3815E815DgaGgaT11B.1.1.5190.00004
ORF1ab/nsp3815E815DgaGgaT11B.1.1600.000031
ORF1ab/nsp3815E815DgaGgaT11B.1.160.300.002976
ORF1ab/nsp3815E815DgaGgaT11B.1.160.320.004292
ORF1ab/nsp3815E815DgaGgaT11B.1.177.440.000519
ORF1ab/nsp3815E815DgaGgaT11B.1.2140.003663
ORF1ab/nsp3815E815DgaGgaC11B.1.2390.001221
ORF1ab/nsp3815E815DgaGgaT11B.1.2400.000216
ORF1ab/nsp3815E815DgaGgaT11B.1.2580.000067
ORF1ab/nsp3815E815DgaGgaT11B.1.3110.000275
ORF1ab/nsp3815E815DgaGgaC11B.1.4270.00005
ORF1ab/nsp3815E815DgaGgaT11B.1.4290.000024
ORF1ab/nsp3815E815DgaGgaT11B.1.4740.001901
ORF1ab/nsp3815E815DgaGgaT11B.1.617.10.000129
ORF1ab/nsp3815E815DgaGgaT11B.1.6370.000073
ORF1ab/nsp3815E815DgaGgaT11B.400.000364

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.