CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 821 | D821N | D1639N | nonsyn | Gat | Aat | 3619 | 3619 | 1 | 5180-5182 |
Details of the mutation D821N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 3619 | 3619 | All | 0.000692 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1685 | 1685 | C.36.3 | 0.955757 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 513 | 513 | C.36 | 0.467213 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 357 | 357 | AY.3 | 0.003551 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 315 | 315 | C.36.3.1 | 0.855978 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 108 | 108 | B.1.351 | 0.00321 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 82 | 82 | B.1.160 | 0.002557 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 74 | 74 | AY.45 | 0.009005 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 61 | 61 | B.1.1.7 | 0.000055 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 52 | 52 | B.1.1 | 0.000943 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 51 | 51 | B.1.604 | 0.87931 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 41 | 41 | B.1 | 0.000376 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 31 | 31 | AY.43 | 0.000137 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 30 | 30 | B.1.258 | 0.001996 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 27 | 27 | AY.103 | 0.000168 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 17 | 17 | C.37 | 0.001973 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 6 | 6 | C.39 | 0.113208 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 5 | 5 | B.1.23 | 0.030303 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 5 | 5 | C.17 | 0.277778 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 5 | 5 | C.35 | 0.00387 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 4 | 4 | B.1.1.372 | 0.002755 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 4 | 4 | P.1.2 | 0.004624 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 3 | 3 | B.1.1.482 | 0.069767 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 3 | 3 | B.1.1.57 | 0.034483 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 3 | 3 | B.1.554 | 0.013216 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | B.1.1.380 | 0.019608 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | B.1.81 | 0.042553 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | B.4.5 | 0.02381 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.117 | 0.0125 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.124 | 0.007812 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.219 | 0.009434 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.1.69 | 0.035714 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 821 | D821N | Gat | Aat | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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