CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = D736D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3736D736DD1554DsyngaCgaT173701737014925-4927

Details of the mutation D736D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3736D736DgaCgaT1737017370All0.003322
ORF1ab/nsp3736D736DgaCgaT1066710667AY.99.20.983043
ORF1ab/nsp3736D736DgaCgaT10531053AY.460.109596
ORF1ab/nsp3736D736DgaCgaT10341034B.1.1.70.000926
ORF1ab/nsp3736D736DgaCgaT527527AY.40.00082
ORF1ab/nsp3736D736DgaCgaT279279AY.440.001698
ORF1ab/nsp3736D736DgaCgaT277277B.1.1770.003647
ORF1ab/nsp3736D736DgaCgaT266266B.1.617.20.001002
ORF1ab/nsp3736D736DgaCgaT208208AY.430.000922
ORF1ab/nsp3736D736DgaCgaT197197B.1.2340.025993
ORF1ab/nsp3736D736DgaCgaT169169B.1.1.5210.903743
ORF1ab/nsp3736D736DgaCgaT153153P.10.00241
ORF1ab/nsp3736D736DgaCgaT135135B.10.001237
ORF1ab/nsp3736D736DgaCgaT118118AY.30.001174
ORF1ab/nsp3736D736DgaCgaT118118B.1.20.001039
ORF1ab/nsp3736D736DgaCgaT117117AY.3.10.009975
ORF1ab/nsp3736D736DgaCgaT9696AY.250.000577
ORF1ab/nsp3736D736DgaCgaT6969B.1.10.001252
ORF1ab/nsp3736D736DgaCgaT6666B.1.6280.023256
ORF1ab/nsp3736D736DgaCgaT6565AY.1030.000404
ORF1ab/nsp3736D736DgaCgaT5757AY.260.001614
ORF1ab/nsp3736D736DgaCgaT5757B.1.1.2740.287879
ORF1ab/nsp3736D736DgaCgaT5151B.1.1600.001591
ORF1ab/nsp3736D736DgaCgaT5151B.1.2210.003623
ORF1ab/nsp3736D736DgaCgaT5050AY.4.20.001084
ORF1ab/nsp3736D736DgaCgaT4141B.1.3490.029307
ORF1ab/nsp3736D736DgaCgaT4040B.1.6370.002923
ORF1ab/nsp3736D736DgaCgaT3838AY.200.001477
ORF1ab/nsp3736D736DgaCgaT3838P.1.90.182692
ORF1ab/nsp3736D736DgaCgaT3131B.1.2430.002157
ORF1ab/nsp3736D736DgaCgaT3131B.1.4290.000729
ORF1ab/nsp3736D736DgaCgaT3030AY.230.002092
ORF1ab/nsp3736D736DgaCgaT3030B.1.177.210.002294
ORF1ab/nsp3736D736DgaCgaT2929AY.1020.000769
ORF1ab/nsp3736D736DgaCgaT2929AY.1190.001024
ORF1ab/nsp3736D736DgaCgaT2929AY.310.537037
ORF1ab/nsp3736D736DgaCgaT2828B.1.1.3840.666667
ORF1ab/nsp3736D736DgaCgaT2828B.1.1.5190.001112
ORF1ab/nsp3736D736DgaCgaT2626P.1.140.001243
ORF1ab/nsp3736D736DgaCgaT2525B.1.5260.000588
ORF1ab/nsp3736D736DgaCgaT2323B.1.1.2160.020481
ORF1ab/nsp3736D736DgaCgaT2222AY.330.001469
ORF1ab/nsp3736D736DgaCgaT2121AY.1000.000966
ORF1ab/nsp3736D736DgaCgaT2020AY.29.10.00441
ORF1ab/nsp3736D736DgaCgaT2020AY.60.000823
ORF1ab/nsp3736D736DgaCgaT1919AY.98.10.00092
ORF1ab/nsp3736D736DgaCgaT1919B.1.5170.008113
ORF1ab/nsp3736D736DgaCgaT1818B.1.177.810.003408
ORF1ab/nsp3736D736DgaCgaT1717P.1.100.004581
ORF1ab/nsp3736D736DgaCgaT1616B.1.160.300.047619
ORF1ab/nsp3736D736DgaCgaT1515AY.50.00031
ORF1ab/nsp3736D736DgaCgaT1515B.1.1.1770.288462
ORF1ab/nsp3736D736DgaCgaT1515B.1.1.2140.000832
ORF1ab/nsp3736D736DgaCgaT1515B.1.177.50.018634
ORF1ab/nsp3736D736DgaCgaT1414AY.1180.000877
ORF1ab/nsp3736D736DgaCgaT1414AY.740.001619
ORF1ab/nsp3736D736DgaCgaT1414B.1.1.2770.010622
ORF1ab/nsp3736D736DgaCgaT1414B.1.2580.000932
ORF1ab/nsp3736D736DgaCgaT1313AY.450.001582
ORF1ab/nsp3736D736DgaCgaT1313AY.46.60.000939
ORF1ab/nsp3736D736DgaCgaT1313AY.770.014656
ORF1ab/nsp3736D736DgaCgaT1313AZ.10.011275
ORF1ab/nsp3736D736DgaCgaT1313C.370.001509
ORF1ab/nsp3736D736DgaCgaT1212AY.120.003793
ORF1ab/nsp3736D736DgaCgaT1212AY.390.000297
ORF1ab/nsp3736D736DgaCgaT1212AY.4.40.00491
ORF1ab/nsp3736D736DgaCgaT1212AY.470.000373
ORF1ab/nsp3736D736DgaCgaT1111AY.290.000174
ORF1ab/nsp3736D736DgaCgaT1111AY.5.30.003711
ORF1ab/nsp3736D736DgaCgaT1010B.1.1.740.043103
ORF1ab/nsp3736D736DgaCgaT1010B.1.351.20.003026
ORF1ab/nsp3736D736DgaCgaT99AY.9.20.000331
ORF1ab/nsp3736D736DgaCgaT99B.1.3510.000268
ORF1ab/nsp3736D736DgaCgaT88AY.120.2.10.003986
ORF1ab/nsp3736D736DgaCgaT88AY.140.000704
ORF1ab/nsp3736D736DgaCgaT88AY.20.002849
ORF1ab/nsp3736D736DgaCgaT88AY.750.000448
ORF1ab/nsp3736D736DgaCgaT88B.1.3670.006339
ORF1ab/nsp3736D736DgaCgaT88B.1.6210.000708
ORF1ab/nsp3736D736DgaCgaT88P.1.150.001859
ORF1ab/nsp3736D736DgaCgaT88P.20.001493
ORF1ab/nsp3736D736DgaCgaT77AY.1170.000592
ORF1ab/nsp3736D736DgaCgaT77B.1.1.2180.053846
ORF1ab/nsp3736D736DgaCgaT77B.1.1.2220.001428
ORF1ab/nsp3736D736DgaCgaT77B.1.1.500.004752
ORF1ab/nsp3736D736DgaCgaT77B.1.2140.025641
ORF1ab/nsp3736D736DgaCgaT66AY.270.000388
ORF1ab/nsp3736D736DgaCgaT66AY.4.2.10.000894
ORF1ab/nsp3736D736DgaCgaT66AY.46.40.000987
ORF1ab/nsp3736D736DgaCgaT66AY.840.002625
ORF1ab/nsp3736D736DgaCgaT66B.1.1.280.001867
ORF1ab/nsp3736D736DgaCgaT66B.1.36.290.003104
ORF1ab/nsp3736D736DgaCgaT66B.1.80.011834
ORF1ab/nsp3736D736DgaCgaT55AY.1100.000563
ORF1ab/nsp3736D736DgaCgaT55AY.1130.000712
ORF1ab/nsp3736D736DgaCgaT55AY.1210.000677
ORF1ab/nsp3736D736DgaCgaT55AY.320.002662
ORF1ab/nsp3736D736DgaCgaT55AY.540.000477
ORF1ab/nsp3736D736DgaCgaT55AY.920.001436
ORF1ab/nsp3736D736DgaCgaT55B.1.1.3170.002058
ORF1ab/nsp3736D736DgaCgaT55B.1.177.300.012563
ORF1ab/nsp3736D736DgaCgaT55B.1.177.570.001405
ORF1ab/nsp3736D736DgaCgaT55B.1.3620.007704
ORF1ab/nsp3736D736DgaCgaT55B.1.5960.000436
ORF1ab/nsp3736D736DgaCgaT55P.1.170.000809
ORF1ab/nsp3736D736DgaCgaT44A.20.002647
ORF1ab/nsp3736D736DgaCgaT44AY.1050.002572
ORF1ab/nsp3736D736DgaCgaT44AY.360.000593
ORF1ab/nsp3736D736DgaCgaT44AY.39.10.000158
ORF1ab/nsp3736D736DgaCgaT44AY.590.002119
ORF1ab/nsp3736D736DgaCgaT44AY.91.10.01626
ORF1ab/nsp3736D736DgaCgaT44B0.000511
ORF1ab/nsp3736D736DgaCgaT44B.1.1.1870.035398
ORF1ab/nsp3736D736DgaCgaT44B.1.1.250.002274
ORF1ab/nsp3736D736DgaCgaT44B.1.1.2970.008949
ORF1ab/nsp3736D736DgaCgaT44B.1.177.600.000874
ORF1ab/nsp3736D736DgaCgaT44B.1.177.70.000659
ORF1ab/nsp3736D736DgaCgaT44B.1.360.000584
ORF1ab/nsp3736D736DgaCgaT44B.1.4270.000202
ORF1ab/nsp3736D736DgaCgaT44B.1.5950.001044
ORF1ab/nsp3736D736DgaCgaT44B.320.108108
ORF1ab/nsp3736D736DgaCgaT44P.1.70.001277
ORF1ab/nsp3736D736DgaCgaT33AY.10.001187
ORF1ab/nsp3736D736DgaCgaT33AY.160.001139
ORF1ab/nsp3736D736DgaCgaT33AY.16.10.00141
ORF1ab/nsp3736D736DgaCgaT33AY.340.000291
ORF1ab/nsp3736D736DgaCgaT33AY.46.30.002801
ORF1ab/nsp3736D736DgaCgaT33AY.46.50.000595
ORF1ab/nsp3736D736DgaCgaT33AY.510.002727
ORF1ab/nsp3736D736DgaCgaT33AY.610.000314
ORF1ab/nsp3736D736DgaCgaT33AY.9.10.000251
ORF1ab/nsp3736D736DgaCgaT33B.1.1.2630.004673
ORF1ab/nsp3736D736DgaCgaT33B.1.1.2840.000322
ORF1ab/nsp3736D736DgaCgaT33B.1.1.4160.002715
ORF1ab/nsp3736D736DgaCgaT33B.1.1.4480.006098
ORF1ab/nsp3736D736DgaCgaT33B.1.1.4530.025424
ORF1ab/nsp3736D736DgaCgaT33B.1.1.4620.025862
ORF1ab/nsp3736D736DgaCgaT33B.1.1.5260.010638
ORF1ab/nsp3736D736DgaCgaT33B.1.1470.002268
ORF1ab/nsp3736D736DgaCgaT33B.1.177.700.017751
ORF1ab/nsp3736D736DgaCgaT33B.1.177.80.002257
ORF1ab/nsp3736D736DgaCgaT33B.1.258.170.000312
ORF1ab/nsp3736D736DgaCgaT33B.1.30.007853
ORF1ab/nsp3736D736DgaCgaT33B.1.3110.000824
ORF1ab/nsp3736D736DgaCgaT33B.1.4700.004213
ORF1ab/nsp3736D736DgaCgaT33B.1.5240.004219
ORF1ab/nsp3736D736DgaCgaT33B.1.5270.011111
ORF1ab/nsp3736D736DgaCgaT33B.1.5640.001278
ORF1ab/nsp3736D736DgaCgaT33B.1.5760.00272
ORF1ab/nsp3736D736DgaCgaT33B.1.617.10.000387
ORF1ab/nsp3736D736DgaCgaT33B.1.6190.002613
ORF1ab/nsp3736D736DgaCgaT33N.100.088235
ORF1ab/nsp3736D736DgaCgaT33Q.10.000379
ORF1ab/nsp3736D736DgaCgaT33Q.80.000495
ORF1ab/nsp3736D736DgaCgaT33U.20.026316
ORF1ab/nsp3736D736DgaCgaT22AY.100.00106
ORF1ab/nsp3736D736DgaCgaT22AY.1200.000074
ORF1ab/nsp3736D736DgaCgaT22AY.240.000862
ORF1ab/nsp3736D736DgaCgaT22AY.300.000791
ORF1ab/nsp3736D736DgaCgaT22AY.400.001929
ORF1ab/nsp3736D736DgaCgaT22AY.46.20.001271
ORF1ab/nsp3736D736DgaCgaT22AY.670.000929
ORF1ab/nsp3736D736DgaCgaT22AY.930.000546
ORF1ab/nsp3736D736DgaCgaT22AY.980.000158
ORF1ab/nsp3736D736DgaCgaT22AY.99.10.003106
ORF1ab/nsp3736D736DgaCgaT22B.1.1.1390.045455
ORF1ab/nsp3736D736DgaCgaT22B.1.1.3180.000604
ORF1ab/nsp3736D736DgaCgaT22B.1.1.330.000842
ORF1ab/nsp3736D736DgaCgaT22B.1.1.3680.006173
ORF1ab/nsp3736D736DgaCgaT22B.1.1.4340.000697
ORF1ab/nsp3736D736DgaCgaT22B.1.1110.00235
ORF1ab/nsp3736D736DgaCgaT22B.1.160.160.001859
ORF1ab/nsp3736D736DgaCgaT22B.1.2400.000431
ORF1ab/nsp3736D736DgaCgaT22B.1.258.110.000793
ORF1ab/nsp3736D736DgaCgaT22B.1.258.30.00335
ORF1ab/nsp3736D736DgaCgaT22B.1.2790.001027
ORF1ab/nsp3736D736DgaCgaT22B.1.2800.014286
ORF1ab/nsp3736D736DgaCgaT22B.1.3320.006993
ORF1ab/nsp3736D736DgaCgaT22B.1.3400.008584
ORF1ab/nsp3736D736DgaCgaT22B.1.4250.005988
ORF1ab/nsp3736D736DgaCgaT22B.1.466.20.000782
ORF1ab/nsp3736D736DgaCgaT22B.1.5370.04
ORF1ab/nsp3736D736DgaCgaT22B.1.5750.000607
ORF1ab/nsp3736D736DgaCgaT22B.1.5820.000981
ORF1ab/nsp3736D736DgaCgaT22B.1.621.10.001012
ORF1ab/nsp3736D736DgaCgaT22C.160.002121
ORF1ab/nsp3736D736DgaCgaT22D.20.00015
ORF1ab/nsp3736D736DgaCgaT22P.1.120.000968
ORF1ab/nsp3736D736DgaCgaT11A.10.000282
ORF1ab/nsp3736D736DgaCgaT11A.2.30.004739
ORF1ab/nsp3736D736DgaCgaT11A.2.50.000499
ORF1ab/nsp3736D736DgaCgaT11A.2.5.10.004808
ORF1ab/nsp3736D736DgaCgaT11A.2.5.20.001572
ORF1ab/nsp3736D736DgaCgaT11AE.80.000489
ORF1ab/nsp3736D736DgaCgaT11AY.1010.00049
ORF1ab/nsp3736D736DgaCgaT11AY.1040.001984
ORF1ab/nsp3736D736DgaCgaT11AY.1060.000335
ORF1ab/nsp3736D736DgaCgaT11AY.1070.000466
ORF1ab/nsp3736D736DgaCgaT11AY.1110.000183
ORF1ab/nsp3736D736DgaCgaT11AY.130.000161
ORF1ab/nsp3736D736DgaCgaT11AY.34.10.00051
ORF1ab/nsp3736D736DgaCgaT11AY.350.000233
ORF1ab/nsp3736D736DgaCgaT11AY.380.000499
ORF1ab/nsp3736D736DgaCgaT11AY.4.10.000737
ORF1ab/nsp3736D736DgaCgaT11AY.410.000294
ORF1ab/nsp3736D736DgaCgaT11AY.420.00004
ORF1ab/nsp3736D736DgaCgaT11AY.480.000465
ORF1ab/nsp3736D736DgaCgaT11AY.550.000917
ORF1ab/nsp3736D736DgaCgaT11AY.630.000387
ORF1ab/nsp3736D736DgaCgaT11AY.690.000187
ORF1ab/nsp3736D736DgaCgaT11AY.70.000196
ORF1ab/nsp3736D736DgaCgaT11AY.710.000475
ORF1ab/nsp3736D736DgaCgaT11AY.830.001724
ORF1ab/nsp3736D736DgaCgaT11AY.850.000427
ORF1ab/nsp3736D736DgaCgaT11AY.90.000068
ORF1ab/nsp3736D736DgaCgaT11AY.940.000443
ORF1ab/nsp3736D736DgaCgaT11AY.960.002075
ORF1ab/nsp3736D736DgaCgaT11B.1.1.100.001115
ORF1ab/nsp3736D736DgaCgaT11B.1.1.120.007463
ORF1ab/nsp3736D736DgaCgaT11B.1.1.1530.001095
ORF1ab/nsp3736D736DgaCgaT11B.1.1.160.055556
ORF1ab/nsp3736D736DgaCgaT11B.1.1.1760.000439
ORF1ab/nsp3736D736DgaCgaT11B.1.1.1890.001513
ORF1ab/nsp3736D736DgaCgaT11B.1.1.2200.001859
ORF1ab/nsp3736D736DgaCgaT11B.1.1.2270.004348
ORF1ab/nsp3736D736DgaCgaT11B.1.1.2370.005405
ORF1ab/nsp3736D736DgaCgaT11B.1.1.2400.004695
ORF1ab/nsp3736D736DgaCgaT11B.1.1.2530.002506
ORF1ab/nsp3736D736DgaCgaT11B.1.1.2540.011236
ORF1ab/nsp3736D736DgaCgaT11B.1.1.270.00565
ORF1ab/nsp3736D736DgaCgaT11B.1.1.2880.001916
ORF1ab/nsp3736D736DgaCgaT11B.1.1.2910.000742
ORF1ab/nsp3736D736DgaCgaT11B.1.1.2980.000862
ORF1ab/nsp3736D736DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp3736D736DgaCgaT11B.1.1.3150.008475
ORF1ab/nsp3736D736DgaCgaT11B.1.1.370.000193
ORF1ab/nsp3736D736DgaCgaT11B.1.1.3750.011905
ORF1ab/nsp3736D736DgaCgaT11B.1.1.390.00051
ORF1ab/nsp3736D736DgaCgaT11B.1.1.4170.002703
ORF1ab/nsp3736D736DgaCgaT11B.1.110.30.000718
ORF1ab/nsp3736D736DgaCgaT11B.1.160.290.004219
ORF1ab/nsp3736D736DgaCgaT11B.1.177.320.00135
ORF1ab/nsp3736D736DgaCgaT11B.1.177.340.052632
ORF1ab/nsp3736D736DgaCgaT11B.1.177.440.000519
ORF1ab/nsp3736D736DgaCgaT11B.1.177.500.004695
ORF1ab/nsp3736D736DgaCgaT11B.1.177.610.043478
ORF1ab/nsp3736D736DgaCgaT11B.1.177.650.000665
ORF1ab/nsp3736D736DgaCgaT11B.1.177.790.002342
ORF1ab/nsp3736D736DgaCgaT11B.1.177.830.001481
ORF1ab/nsp3736D736DgaCgaT11B.1.1870.033333
ORF1ab/nsp3736D736DgaCgaT11B.1.1890.004292
ORF1ab/nsp3736D736DgaCgaT11B.1.1950.005025
ORF1ab/nsp3736D736DgaCgaT11B.1.2060.000816
ORF1ab/nsp3736D736DgaCgaT11B.1.2320.000537
ORF1ab/nsp3736D736DgaCgaT11B.1.2370.004975
ORF1ab/nsp3736D736DgaCgaT11B.1.258.220.002667
ORF1ab/nsp3736D736DgaCgaT11B.1.258.240.010753
ORF1ab/nsp3736D736DgaCgaT11B.1.2810.021739
ORF1ab/nsp3736D736DgaCgaT11B.1.3200.001245
ORF1ab/nsp3736D736DgaCgaT11B.1.36.160.001425
ORF1ab/nsp3736D736DgaCgaT11B.1.36.80.001
ORF1ab/nsp3736D736DgaCgaT11B.1.3690.000285
ORF1ab/nsp3736D736DgaCgaT11B.1.3820.008929
ORF1ab/nsp3736D736DgaCgaT11B.1.4040.001302
ORF1ab/nsp3736D736DgaCgaT11B.1.4220.000812
ORF1ab/nsp3736D736DgaCgaT11B.1.4800.002488
ORF1ab/nsp3736D736DgaCgaT11B.1.5000.052632
ORF1ab/nsp3736D736DgaCgaT11B.1.5250.000113
ORF1ab/nsp3736D736DgaCgaT11B.1.5330.009615
ORF1ab/nsp3736D736DgaCgaT11B.1.5480.035714
ORF1ab/nsp3736D736DgaCgaT11B.1.5610.000397
ORF1ab/nsp3736D736DgaCgaT11B.1.5670.003333
ORF1ab/nsp3736D736DgaCgaT11B.1.5770.000687
ORF1ab/nsp3736D736DgaCgaT11B.1.5880.00091
ORF1ab/nsp3736D736DgaCgaT11B.1.6090.000479
ORF1ab/nsp3736D736DgaCgaT11B.1.6120.002653
ORF1ab/nsp3736D736DgaCgaT11B.1.6230.000536
ORF1ab/nsp3736D736DgaCgaT11B.1.6250.002353
ORF1ab/nsp3736D736DgaCgaT11B.1.6270.00202
ORF1ab/nsp3736D736DgaCgaT11B.1.9.50.005682
ORF1ab/nsp3736D736DgaCgaT11C.350.000774
ORF1ab/nsp3736D736DgaCgaT11C.40.01
ORF1ab/nsp3736D736DgaCgaT11N.50.001767
ORF1ab/nsp3736D736DgaCgaT11P.1.10.000318
ORF1ab/nsp3736D736DgaCgaT11P.1.20.001156
ORF1ab/nsp3736D736DgaCgaT11W.40.001351
ORF1ab/nsp3736D736DgaCgaT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.