CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 505 | D505D | D1323D | syn | gaC | gaT | 1917 | 1917 | 1 | 4232-4234 |
Details of the mutation D505D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1917 | 1917 | All | 0.000367 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 564 | 564 | B.1.1.7 | 0.000505 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 131 | 131 | AY.43 | 0.00058 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 117 | 117 | B.1.351 | 0.003478 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 98 | 98 | B.1.1.157 | 0.089498 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 74 | 74 | B.1.2 | 0.000652 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 72 | 72 | AY.4 | 0.000112 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 68 | 68 | B.1.525 | 0.007695 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 60 | 60 | B.1.362 | 0.09245 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 48 | 48 | AY.26 | 0.001359 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 47 | 47 | AY.5 | 0.000971 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 37 | 37 | B.1.617.2 | 0.000139 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 34 | 34 | B.1 | 0.000311 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 28 | 28 | AY.39 | 0.000692 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 27 | 27 | B.4.1 | 0.509434 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 25 | 25 | Q.1 | 0.003158 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 23 | 23 | B.1.1 | 0.000417 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 23 | 23 | B.1.177.12 | 0.003489 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 22 | 22 | B.1.177 | 0.00029 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 22 | 22 | B.1.401 | 0.180328 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 20 | 20 | B.1.147 | 0.015117 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 12 | 12 | B.1.561 | 0.004764 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 9 | 9 | B.1.1.216 | 0.008014 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 8 | 8 | Q.4 | 0.003638 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 7 | 7 | B.1.177.58 | 0.009321 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 7 | 7 | P.1.13 | 0.006289 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 6 | 6 | B.1.1.305 | 0.023166 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 6 | 6 | B.1.438.1 | 0.000644 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 4 | 4 | B.1.564 | 0.001704 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | B.1.1.417 | 0.005405 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | B.1.214.3 | 0.014286 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.29 | 0.010309 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.1.59 | 0.006494 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.348 | 0.018182 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 505 | D505D | gaC | gaT | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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