CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = D455G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3455D455GD1273GnonsyngAcgGc2392320.9707114082-4084
ORF1ab/nsp3455D455GD1273GnonsyngACgGT23970.02928874082-4084

Details of the mutation D455G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3455D455GgAcgGc232239All0.000044
ORF1ab/nsp3455D455GgACgGT7239All0.000001
ORF1ab/nsp3455D455GgAcgGc5151AY.260.001444
ORF1ab/nsp3455D455GgAcgGc5151B.1.1.70.000046
ORF1ab/nsp3455D455GgAcgGc3333B.1.5260.000776
ORF1ab/nsp3455D455GgAcgGc2227AY.40.000034
ORF1ab/nsp3455D455GgACgGT527AY.40.000008
ORF1ab/nsp3455D455GgAcgGc1010B.1.20.000088
ORF1ab/nsp3455D455GgAcgGc88P.10.000126
ORF1ab/nsp3455D455GgAcgGc55AY.1030.000031
ORF1ab/nsp3455D455GgAcgGc55AY.430.000022
ORF1ab/nsp3455D455GgAcgGc44B.10.000037
ORF1ab/nsp3455D455GgAcgGc33AY.250.000018
ORF1ab/nsp3455D455GgAcgGc33AY.30.00003
ORF1ab/nsp3455D455GgAcgGc33B.1.160.160.002788
ORF1ab/nsp3455D455GgAcgGc33B.1.617.20.000011
ORF1ab/nsp3455D455GgAcgGc33B.520.030303
ORF1ab/nsp3455D455GgACgGT120.055556
ORF1ab/nsp3455D455GgAcgGc120.055556
ORF1ab/nsp3455D455GgAcgGc22AY.360.000296
ORF1ab/nsp3455D455GgAcgGc22AY.390.000049
ORF1ab/nsp3455D455GgAcgGc22AY.440.000012
ORF1ab/nsp3455D455GgAcgGc22AY.610.00021
ORF1ab/nsp3455D455GgAcgGc22AY.9.20.000073
ORF1ab/nsp3455D455GgAcgGc22AY.930.000546
ORF1ab/nsp3455D455GgAcgGc12B0.000128
ORF1ab/nsp3455D455GgACgGT12B0.000128
ORF1ab/nsp3455D455GgAcgGc22B.1.3510.000059
ORF1ab/nsp3455D455GgAcgGc11AY.1010.00049
ORF1ab/nsp3455D455GgAcgGc11AY.270.000065
ORF1ab/nsp3455D455GgAcgGc11AY.5.40.000277
ORF1ab/nsp3455D455GgAcgGc11AY.850.000427
ORF1ab/nsp3455D455GgAcgGc11AY.940.000443
ORF1ab/nsp3455D455GgAcgGc11B.1.1.4160.000905
ORF1ab/nsp3455D455GgAcgGc11B.1.1.4480.002033
ORF1ab/nsp3455D455GgAcgGc11B.1.1.5190.00004
ORF1ab/nsp3455D455GgAcgGc11B.1.1770.000013
ORF1ab/nsp3455D455GgAcgGc11B.1.36.100.004785
ORF1ab/nsp3455D455GgAcgGc11C.370.000116
ORF1ab/nsp3455D455GgAcgGc11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.