CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 455 | D455D | D1273D | syn | gaC | gaT | 12317 | 12317 | 1 | 4082-4084 |
Details of the mutation D455D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 12317 | 12317 | All | 0.002356 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2636 | 2636 | B.1.1.7 | 0.00236 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1544 | 1544 | AY.4 | 0.002403 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 813 | 813 | B.1.1.519 | 0.032285 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 740 | 740 | B.1.617.2 | 0.002786 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 638 | 638 | AY.54 | 0.060831 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 518 | 518 | AY.103 | 0.003216 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 482 | 482 | AY.43 | 0.002135 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 291 | 291 | B.1.2 | 0.002562 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 277 | 277 | AY.25 | 0.001666 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 195 | 195 | B.1.1.284 | 0.020943 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 165 | 165 | B.1 | 0.001511 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 156 | 156 | B.1.427 | 0.007878 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 152 | 152 | B.1.1.317 | 0.062577 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 145 | 145 | P.1 | 0.002284 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 140 | 140 | AY.44 | 0.000852 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 134 | 134 | B.1.416.1 | 0.209375 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 133 | 133 | AY.23 | 0.009277 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 131 | 131 | B.1.429 | 0.003082 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 126 | 126 | B.1.351 | 0.003746 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 113 | 113 | B.1.1 | 0.00205 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 110 | 110 | B.1.177 | 0.001448 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 100 | 100 | AY.5 | 0.002065 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 87 | 87 | B.1.160 | 0.002713 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 82 | 82 | AY.75 | 0.004594 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 80 | 80 | AY.3 | 0.000796 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 77 | 77 | AY.39 | 0.001903 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 75 | 75 | AY.26 | 0.002123 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 70 | 70 | AY.4.2 | 0.001518 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 67 | 67 | AY.117 | 0.005663 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 63 | 63 | B.1.444 | 1 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 60 | 60 | AY.102 | 0.001591 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 57 | 57 | B.1.526 | 0.00134 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 51 | 51 | B.1.239 | 0.062271 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 47 | 47 | B.1.143 | 1 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 46 | 46 | B.1.438.1 | 0.004934 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 43 | 43 | AY.100 | 0.001978 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 36 | 36 | AY.42 | 0.001448 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 35 | 35 | AY.12 | 0.011062 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 35 | 35 | C.16 | 0.037116 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 34 | 34 | B.1.177.12 | 0.005158 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 34 | 34 | B.1.597 | 0.157407 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 32 | 32 | B.1.621 | 0.002833 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 31 | 31 | AY.33 | 0.00207 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 29 | 29 | AY.6 | 0.001193 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 29 | 29 | B.1.1.1 | 0.009474 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 26 | 26 | AY.120 | 0.000967 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 25 | 25 | P.1.14 | 0.001195 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 24 | 24 | B.1.596 | 0.002091 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 24 | 24 | C.37 | 0.002786 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 23 | 23 | P.1.3 | 0.793103 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 22 | 22 | B.1.221 | 0.001563 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 22 | 22 | B.1.459 | 0.089796 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 21 | 21 | B.1.1.255 | 0.063636 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 21 | 21 | B.1.1.311 | 0.007521 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 21 | 21 | B.1.243 | 0.001461 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 20 | 20 | AY.39.1 | 0.000792 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 19 | 19 | AY.20 | 0.000738 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 19 | 19 | AY.47 | 0.000591 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 19 | 19 | B.1.36.18 | 0.007983 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 19 | 19 | P.1.17 | 0.003073 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 18 | 18 | AY.14 | 0.001584 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 18 | 18 | B.1.1.63 | 0.006944 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 18 | 18 | B.1.517 | 0.007686 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 17 | 17 | B.1.177.81 | 0.003218 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 17 | 17 | B.1.417 | 0.485714 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 16 | 16 | AY.119 | 0.000565 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 16 | 16 | B.1.1.33 | 0.006734 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 16 | 16 | B.1.582 | 0.007851 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 16 | 16 | R.1 | 0.00144 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 14 | 14 | AY.74 | 0.001619 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 14 | 14 | AY.9 | 0.000946 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 14 | 14 | B.1.36 | 0.002043 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 13 | 13 | AE.2 | 0.764706 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 13 | 13 | AY.109 | 0.009615 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 13 | 13 | AY.121 | 0.001759 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 13 | 13 | AY.36 | 0.001927 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 13 | 13 | AY.46.4 | 0.002139 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 13 | 13 | B.1.177.21 | 0.000994 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 13 | 13 | B.1.525 | 0.001471 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 13 | 13 | B.1.617.1 | 0.001677 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 12 | 12 | Q.8 | 0.001979 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 11 | 11 | B.1.1.147 | 1 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 11 | 11 | B.1.232 | 0.005911 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 11 | 11 | B.1.595 | 0.002871 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 10 | 10 | AE.8 | 0.00489 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 10 | 10 | B.1.1.434 | 0.003486 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 10 | 10 | P.2 | 0.001866 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 10 | 10 | U.2 | 0.087719 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 9 | 9 | A | 0.003483 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 9 | 9 | AY.34 | 0.000873 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 9 | 9 | AY.57 | 0.005906 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 9 | 9 | B.1.581 | 0.084906 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 8 | 8 | AY.99.2 | 0.000737 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 8 | 8 | B.1.36.29 | 0.004139 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 8 | 8 | B.40 | 0.002914 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 8 | 8 | P.1.7 | 0.002554 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 8 | 8 | Q.3 | 0.00116 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 7 | 7 | B.1.1.47 | 0.037433 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 7 | 7 | B.1.399 | 0.01354 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 7 | 7 | B.1.549 | 0.05036 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 7 | 7 | B.1.621.1 | 0.003541 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 7 | 7 | Q.1 | 0.000884 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 6 | 6 | AY.114 | 0.001387 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 6 | 6 | AY.116 | 0.001721 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 6 | 6 | AY.37 | 0.001896 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 6 | 6 | AY.56 | 0.009631 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 6 | 6 | B.1.177.4 | 0.001266 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 6 | 6 | B.1.265 | 0.007624 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 6 | 6 | Q.7 | 0.006667 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 5 | 5 | AY.16.1 | 0.00235 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 5 | 5 | B | 0.000639 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 5 | 5 | B.1.1.153 | 0.005476 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 5 | 5 | B.1.36.1 | 0.005701 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 5 | 5 | B.1.448 | 0.013123 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 5 | 5 | B.1.628 | 0.001762 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | AY.4.3 | 0.003367 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | AY.40 | 0.003857 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | AY.48 | 0.00186 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | AY.82 | 0.005427 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | B.1.1.101 | 0.04 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | B.1.1.420 | 0.004024 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | B.1.119 | 0.042105 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | B.1.177.43 | 0.005908 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | B.1.595.1 | 0.023392 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | C.36.2 | 0.137931 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 4 | 4 | Q.4 | 0.001819 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | AY.79 | 0.003632 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | AY.90 | 0.002053 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.1.10 | 0.003344 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.177.33 | 0.004934 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.177.9 | 0.003995 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.298 | 0.006342 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | G.1 | 0.125 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 3 | 3 | L.3 | 0.010638 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | AZ.3 | 0.00304 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.1.121 | 0.004854 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.1.200 | 0.014925 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.1.217 | 0.007273 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.1.274 | 0.010101 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.1.438 | 0.1 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.113 | 0.03125 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.160.30 | 0.005952 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.177.20 | 0.003035 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.221.1 | 0.005814 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.258.16 | 0.003273 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | C.31 | 0.035714 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AE.3 | 0.032258 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AS.1 | 0.009524 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.152 | 0.04 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.191 | 0.004762 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.213 | 0.021739 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.272 | 0.005208 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.310 | 0.015152 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.437 | 0.010417 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.258.5 | 0.008772 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.330 | 0.028571 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.355 | 0.011111 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp3 | 455 | D455D | gaC | gaT | 1 | 1 | Q.5 | 0.016949 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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