CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 178 | D178Y | D996Y | nonsyn | Gac | Tac | 1740 | 1740 | 1 | 3251-3253 |
Details of the mutation D178Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1740 | 1740 | All | 0.000333 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 581 | 581 | AY.4 | 0.000904 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 106 | 106 | B.1.617.2 | 0.000399 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 102 | 102 | B.1.1.7 | 0.000091 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 102 | 102 | B.1.2 | 0.000898 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 64 | 64 | D.2 | 0.004803 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 63 | 63 | B.1.258 | 0.004192 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 58 | 58 | AY.3 | 0.000577 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 51 | 51 | B.1.1 | 0.000925 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 49 | 49 | AY.44 | 0.000298 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 43 | 43 | AY.43 | 0.000191 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 29 | 29 | B.1.8 | 0.057199 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 22 | 22 | AY.46 | 0.00229 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 20 | 20 | B.1.160 | 0.000624 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 16 | 16 | AY.100 | 0.000736 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 16 | 16 | AY.103 | 0.000099 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 15 | 15 | AY.98.1 | 0.000726 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 14 | 14 | B.1.1.519 | 0.000556 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 12 | 12 | AY.36 | 0.001779 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 11 | 11 | B.1.1.44 | 0.026506 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 10 | 10 | B.1.239 | 0.01221 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 8 | 8 | B.1.1.224 | 0.114286 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 8 | 8 | B.1.1.420 | 0.008048 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 7 | 7 | B.1.221 | 0.000497 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 6 | 6 | B.1.177.81 | 0.001136 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 5 | 5 | B.1.1.322 | 0.04386 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 4 | 4 | B.1.428 | 0.004082 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 4 | 4 | B.1.456 | 0.013072 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 3 | 3 | AY.97 | 0.005102 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 3 | 3 | B.1.1.176 | 0.001318 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | B.1.1.356 | 0.017094 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | B.1.221.2 | 0.008032 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 2 | 2 | N.9 | 0.011905 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.1.355 | 0.015385 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.372 | 0.010989 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.434 | 0.052632 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 178 | D178Y | Gac | Tac | 1 | 1 | P.1.12 | 0.000484 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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