CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = D1638D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31638D1638DD2456DsyngaTgaC2129212917631-7633

Details of the mutation D1638D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31638D1638DgaTgaC21292129All0.000407
ORF1ab/nsp31638D1638DgaTgaC691691B.1.5960.060213
ORF1ab/nsp31638D1638DgaTgaC268268B.1.1.70.00024
ORF1ab/nsp31638D1638DgaTgaC210210AY.40.000327
ORF1ab/nsp31638D1638DgaTgaC127127B.1.617.20.000478
ORF1ab/nsp31638D1638DgaTgaC107107AY.1170.009043
ORF1ab/nsp31638D1638DgaTgaC9292AY.540.008772
ORF1ab/nsp31638D1638DgaTgaC8989B.1.9.40.546012
ORF1ab/nsp31638D1638DgaTgaC8787B.10.000797
ORF1ab/nsp31638D1638DgaTgaC3737AY.250.000223
ORF1ab/nsp31638D1638DgaTgaC3333AY.1020.000875
ORF1ab/nsp31638D1638DgaTgaC3333AY.440.000201
ORF1ab/nsp31638D1638DgaTgaC2424AY.430.000106
ORF1ab/nsp31638D1638DgaTgaC2222B.1.20.000194
ORF1ab/nsp31638D1638DgaTgaC2121AY.1100.002366
ORF1ab/nsp31638D1638DgaTgaC2121B.1.3510.000624
ORF1ab/nsp31638D1638DgaTgaC2121B.1.617.10.002708
ORF1ab/nsp31638D1638DgaTgaC1313AY.990.013641
ORF1ab/nsp31638D1638DgaTgaC1111A.2.50.005489
ORF1ab/nsp31638D1638DgaTgaC99AY.1030.000056
ORF1ab/nsp31638D1638DgaTgaC99AY.30.00009
ORF1ab/nsp31638D1638DgaTgaC99Q.80.001484
ORF1ab/nsp31638D1638DgaTgaC88AY.140.000704
ORF1ab/nsp31638D1638DgaTgaC88B.1.1.10.002614
ORF1ab/nsp31638D1638DgaTgaC88B.1.9.50.045455
ORF1ab/nsp31638D1638DgaTgaC77AY.1190.000247
ORF1ab/nsp31638D1638DgaTgaC66A.2.5.10.028846
ORF1ab/nsp31638D1638DgaTgaC66AY.320.003195
ORF1ab/nsp31638D1638DgaTgaC66AY.390.000148
ORF1ab/nsp31638D1638DgaTgaC66AY.410.001764
ORF1ab/nsp31638D1638DgaTgaC66B.1.10.000109
ORF1ab/nsp31638D1638DgaTgaC66B.1.90.037037
ORF1ab/nsp31638D1638DgaTgaC55AY.930.001365
ORF1ab/nsp31638D1638DgaTgaC44AY.1000.000184
ORF1ab/nsp31638D1638DgaTgaC44AY.50.000083
ORF1ab/nsp31638D1638DgaTgaC44AY.750.000224
ORF1ab/nsp31638D1638DgaTgaC44B.1.1.2690.005413
ORF1ab/nsp31638D1638DgaTgaC44B.1.5260.000094
ORF1ab/nsp31638D1638DgaTgaC44B.1.617.30.01194
ORF1ab/nsp31638D1638DgaTgaC44C.370.000464
ORF1ab/nsp31638D1638DgaTgaC33AY.1180.000188
ORF1ab/nsp31638D1638DgaTgaC33AY.850.001282
ORF1ab/nsp31638D1638DgaTgaC33B.1.1.2140.000166
ORF1ab/nsp31638D1638DgaTgaC33B.1.2210.000213
ORF1ab/nsp31638D1638DgaTgaC33B.1.4250.008982
ORF1ab/nsp31638D1638DgaTgaC33B.1.5250.000339
ORF1ab/nsp31638D1638DgaTgaC33R.10.00027
ORF1ab/nsp31638D1638DgaTgaC22AY.1160.000574
ORF1ab/nsp31638D1638DgaTgaC22AY.1210.000271
ORF1ab/nsp31638D1638DgaTgaC22AY.230.000139
ORF1ab/nsp31638D1638DgaTgaC22AY.4.2.10.000298
ORF1ab/nsp31638D1638DgaTgaC22AY.610.00021
ORF1ab/nsp31638D1638DgaTgaC22AY.75.10.000361
ORF1ab/nsp31638D1638DgaTgaC22B0.000256
ORF1ab/nsp31638D1638DgaTgaC22B.1.177.860.000367
ORF1ab/nsp31638D1638DgaTgaC22B.1.2320.001075
ORF1ab/nsp31638D1638DgaTgaC22B.1.3240.00321
ORF1ab/nsp31638D1638DgaTgaC22B.1.4290.000047
ORF1ab/nsp31638D1638DgaTgaC22B.6.60.001778
ORF1ab/nsp31638D1638DgaTgaC22C.310.035714
ORF1ab/nsp31638D1638DgaTgaC22P.10.000032
ORF1ab/nsp31638D1638DgaTgaC11A.2.40.003367
ORF1ab/nsp31638D1638DgaTgaC11A.23.10.000704
ORF1ab/nsp31638D1638DgaTgaC11AT.10.005128
ORF1ab/nsp31638D1638DgaTgaC11AY.1080.001103
ORF1ab/nsp31638D1638DgaTgaC11AY.1130.000142
ORF1ab/nsp31638D1638DgaTgaC11AY.1140.000231
ORF1ab/nsp31638D1638DgaTgaC11AY.120.000316
ORF1ab/nsp31638D1638DgaTgaC11AY.360.000148
ORF1ab/nsp31638D1638DgaTgaC11AY.4.20.000022
ORF1ab/nsp31638D1638DgaTgaC11AY.450.000122
ORF1ab/nsp31638D1638DgaTgaC11AY.5.30.000337
ORF1ab/nsp31638D1638DgaTgaC11AY.60.000041
ORF1ab/nsp31638D1638DgaTgaC11AY.620.000436
ORF1ab/nsp31638D1638DgaTgaC11AY.680.000274
ORF1ab/nsp31638D1638DgaTgaC11AY.790.001211
ORF1ab/nsp31638D1638DgaTgaC11AY.9.10.000084
ORF1ab/nsp31638D1638DgaTgaC11AY.98.10.000048
ORF1ab/nsp31638D1638DgaTgaC11AZ.10.000867
ORF1ab/nsp31638D1638DgaTgaC11B.1.1.3060.000438
ORF1ab/nsp31638D1638DgaTgaC11B.1.1.3480.000796
ORF1ab/nsp31638D1638DgaTgaC11B.1.1180.006711
ORF1ab/nsp31638D1638DgaTgaC11B.1.1390.000733
ORF1ab/nsp31638D1638DgaTgaC11B.1.1600.000031
ORF1ab/nsp31638D1638DgaTgaC11B.1.1770.000013
ORF1ab/nsp31638D1638DgaTgaC11B.1.177.730.000566
ORF1ab/nsp31638D1638DgaTgaC11B.1.177.820.000477
ORF1ab/nsp31638D1638DgaTgaC11B.1.2580.000067
ORF1ab/nsp31638D1638DgaTgaC11B.1.258.40.003448
ORF1ab/nsp31638D1638DgaTgaC11B.1.360.000146
ORF1ab/nsp31638D1638DgaTgaC11B.1.36.10.00114
ORF1ab/nsp31638D1638DgaTgaC11B.1.36.80.001
ORF1ab/nsp31638D1638DgaTgaC11B.1.3750.00082
ORF1ab/nsp31638D1638DgaTgaC11B.1.3980.002976
ORF1ab/nsp31638D1638DgaTgaC11B.1.438.10.000107
ORF1ab/nsp31638D1638DgaTgaC11B.1.5360.02381
ORF1ab/nsp31638D1638DgaTgaC11B.1.5680.001111
ORF1ab/nsp31638D1638DgaTgaC11B.1.5880.00091
ORF1ab/nsp31638D1638DgaTgaC11B.1.6090.000479
ORF1ab/nsp31638D1638DgaTgaC11B.1.6210.000089
ORF1ab/nsp31638D1638DgaTgaC11B.1.621.10.000506
ORF1ab/nsp31638D1638DgaTgaC11B.1.6270.00202
ORF1ab/nsp31638D1638DgaTgaC11B.6.30.026316
ORF1ab/nsp31638D1638DgaTgaC11P.1.120.000484
ORF1ab/nsp31638D1638DgaTgaC11P.1.140.000048
ORF1ab/nsp31638D1638DgaTgaC11P.1.40.000977
ORF1ab/nsp31638D1638DgaTgaC11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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