CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = D1283D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31283D1283DD2101DsyngaCgaT8694869416566-6568

Details of the mutation D1283D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31283D1283DgaCgaT86948694All0.001663
ORF1ab/nsp31283D1283DgaCgaT50335033Q.30.729949
ORF1ab/nsp31283D1283DgaCgaT799799B.1.1.70.000715
ORF1ab/nsp31283D1283DgaCgaT697697AY.40.001085
ORF1ab/nsp31283D1283DgaCgaT257257B.1.4290.006047
ORF1ab/nsp31283D1283DgaCgaT217217B.1.617.20.000817
ORF1ab/nsp31283D1283DgaCgaT117117B.1.1770.001541
ORF1ab/nsp31283D1283DgaCgaT102102AY.1000.004693
ORF1ab/nsp31283D1283DgaCgaT101101P.10.001591
ORF1ab/nsp31283D1283DgaCgaT7171B.1.1.5190.002819
ORF1ab/nsp31283D1283DgaCgaT6161B.10.000559
ORF1ab/nsp31283D1283DgaCgaT5858B.1.20.000511
ORF1ab/nsp31283D1283DgaCgaT5858B.1.36.360.034919
ORF1ab/nsp31283D1283DgaCgaT5757AY.1030.000354
ORF1ab/nsp31283D1283DgaCgaT5050B.1.5260.001175
ORF1ab/nsp31283D1283DgaCgaT4343AY.250.000259
ORF1ab/nsp31283D1283DgaCgaT4343AY.430.000191
ORF1ab/nsp31283D1283DgaCgaT3939B.1.10.000707
ORF1ab/nsp31283D1283DgaCgaT3939B.1.2580.002595
ORF1ab/nsp31283D1283DgaCgaT3838AY.1020.001008
ORF1ab/nsp31283D1283DgaCgaT3838B.1.1600.001185
ORF1ab/nsp31283D1283DgaCgaT3535AY.200.00136
ORF1ab/nsp31283D1283DgaCgaT3030AY.230.002092
ORF1ab/nsp31283D1283DgaCgaT2424AY.46.50.004762
ORF1ab/nsp31283D1283DgaCgaT2323AY.440.00014
ORF1ab/nsp31283D1283DgaCgaT2222P.20.004106
ORF1ab/nsp31283D1283DgaCgaT2121B.1.177.810.003976
ORF1ab/nsp31283D1283DgaCgaT2121P.1.140.001004
ORF1ab/nsp31283D1283DgaCgaT2020B.1.5960.001743
ORF1ab/nsp31283D1283DgaCgaT1818AY.390.000445
ORF1ab/nsp31283D1283DgaCgaT1818B.1.2430.001253
ORF1ab/nsp31283D1283DgaCgaT1717AY.30.000169
ORF1ab/nsp31283D1283DgaCgaT1717AY.420.000684
ORF1ab/nsp31283D1283DgaCgaT1717B.1.221.20.068273
ORF1ab/nsp31283D1283DgaCgaT1616AY.150.035556
ORF1ab/nsp31283D1283DgaCgaT1616C.370.001857
ORF1ab/nsp31283D1283DgaCgaT1515AY.340.001454
ORF1ab/nsp31283D1283DgaCgaT1515B.1.177.600.003277
ORF1ab/nsp31283D1283DgaCgaT1414Q.80.002309
ORF1ab/nsp31283D1283DgaCgaT1313AY.750.000728
ORF1ab/nsp31283D1283DgaCgaT1313AY.830.022414
ORF1ab/nsp31283D1283DgaCgaT1111AY.470.000342
ORF1ab/nsp31283D1283DgaCgaT1111B.1.1.1471
ORF1ab/nsp31283D1283DgaCgaT1111B.1.1.1590.051402
ORF1ab/nsp31283D1283DgaCgaT1111B.1.3510.000327
ORF1ab/nsp31283D1283DgaCgaT99AY.50.000186
ORF1ab/nsp31283D1283DgaCgaT99B.1.360.001313
ORF1ab/nsp31283D1283DgaCgaT88AY.1050.005145
ORF1ab/nsp31283D1283DgaCgaT88AY.330.000534
ORF1ab/nsp31283D1283DgaCgaT88AY.4.20.000174
ORF1ab/nsp31283D1283DgaCgaT77AY.1210.000947
ORF1ab/nsp31283D1283DgaCgaT77AY.260.000198
ORF1ab/nsp31283D1283DgaCgaT77B.1.2400.001509
ORF1ab/nsp31283D1283DgaCgaT77B.1.3110.001922
ORF1ab/nsp31283D1283DgaCgaT77B.1.6370.000512
ORF1ab/nsp31283D1283DgaCgaT66AY.290.000095
ORF1ab/nsp31283D1283DgaCgaT66AY.60.000247
ORF1ab/nsp31283D1283DgaCgaT66B.1.1.2140.000333
ORF1ab/nsp31283D1283DgaCgaT66B.1.3460.007864
ORF1ab/nsp31283D1283DgaCgaT66B.1.36.220.007246
ORF1ab/nsp31283D1283DgaCgaT66N.50.010601
ORF1ab/nsp31283D1283DgaCgaT55AY.1190.000177
ORF1ab/nsp31283D1283DgaCgaT55AY.98.10.000242
ORF1ab/nsp31283D1283DgaCgaT55B.1.1.3760.029762
ORF1ab/nsp31283D1283DgaCgaT55B.1.2060.004078
ORF1ab/nsp31283D1283DgaCgaT55B.1.2340.00066
ORF1ab/nsp31283D1283DgaCgaT55B.1.5820.002453
ORF1ab/nsp31283D1283DgaCgaT55B.400.001821
ORF1ab/nsp31283D1283DgaCgaT55D.20.000375
ORF1ab/nsp31283D1283DgaCgaT44AY.1200.000149
ORF1ab/nsp31283D1283DgaCgaT44AY.39.10.000158
ORF1ab/nsp31283D1283DgaCgaT44AY.930.001092
ORF1ab/nsp31283D1283DgaCgaT44B.1.1.3180.001207
ORF1ab/nsp31283D1283DgaCgaT44B.1.4270.000202
ORF1ab/nsp31283D1283DgaCgaT33AD.20.000657
ORF1ab/nsp31283D1283DgaCgaT33AY.120.10.000963
ORF1ab/nsp31283D1283DgaCgaT33AY.450.000365
ORF1ab/nsp31283D1283DgaCgaT33AY.46.40.000494
ORF1ab/nsp31283D1283DgaCgaT33AY.90.000203
ORF1ab/nsp31283D1283DgaCgaT33AY.99.20.000276
ORF1ab/nsp31283D1283DgaCgaT33B.1.177.570.000843
ORF1ab/nsp31283D1283DgaCgaT33B.1.177.70.000495
ORF1ab/nsp31283D1283DgaCgaT33B.1.466.20.001174
ORF1ab/nsp31283D1283DgaCgaT33B.1.5090.002597
ORF1ab/nsp31283D1283DgaCgaT33B.1.5300.021429
ORF1ab/nsp31283D1283DgaCgaT33B.1.5760.00272
ORF1ab/nsp31283D1283DgaCgaT33Q.10.000379
ORF1ab/nsp31283D1283DgaCgaT22A.190.018868
ORF1ab/nsp31283D1283DgaCgaT22AY.1040.003968
ORF1ab/nsp31283D1283DgaCgaT22AY.1170.000169
ORF1ab/nsp31283D1283DgaCgaT22AY.160.000759
ORF1ab/nsp31283D1283DgaCgaT22AY.240.000862
ORF1ab/nsp31283D1283DgaCgaT22AY.460.000208
ORF1ab/nsp31283D1283DgaCgaT22AY.530.000575
ORF1ab/nsp31283D1283DgaCgaT22AY.610.00021
ORF1ab/nsp31283D1283DgaCgaT22AY.9.10.000167
ORF1ab/nsp31283D1283DgaCgaT22AY.9.20.000073
ORF1ab/nsp31283D1283DgaCgaT22B.1.1.1090.08
ORF1ab/nsp31283D1283DgaCgaT22B.1.1.3890.012121
ORF1ab/nsp31283D1283DgaCgaT22B.1.1.4090.005666
ORF1ab/nsp31283D1283DgaCgaT22B.1.177.100.001756
ORF1ab/nsp31283D1283DgaCgaT22B.1.177.650.001331
ORF1ab/nsp31283D1283DgaCgaT22B.1.36.170.000988
ORF1ab/nsp31283D1283DgaCgaT22B.1.4160.002538
ORF1ab/nsp31283D1283DgaCgaT22B.1.5680.002222
ORF1ab/nsp31283D1283DgaCgaT22B.1.5730.012195
ORF1ab/nsp31283D1283DgaCgaT22B.1.5950.000522
ORF1ab/nsp31283D1283DgaCgaT22B.1.6000.011696
ORF1ab/nsp31283D1283DgaCgaT22B.1.6090.000959
ORF1ab/nsp31283D1283DgaCgaT22B.1.6230.001073
ORF1ab/nsp31283D1283DgaCgaT22C.80.008929
ORF1ab/nsp31283D1283DgaCgaT22P.1.120.000968
ORF1ab/nsp31283D1283DgaCgaT22P.1.170.000324
ORF1ab/nsp31283D1283DgaCgaT22Q.40.00091
ORF1ab/nsp31283D1283DgaCgaT11A.10.000282
ORF1ab/nsp31283D1283DgaCgaT11AL.10.012987
ORF1ab/nsp31283D1283DgaCgaT11AY.1160.000287
ORF1ab/nsp31283D1283DgaCgaT11AY.1180.000063
ORF1ab/nsp31283D1283DgaCgaT11AY.120.2.10.000498
ORF1ab/nsp31283D1283DgaCgaT11AY.130.000161
ORF1ab/nsp31283D1283DgaCgaT11AY.16.10.00047
ORF1ab/nsp31283D1283DgaCgaT11AY.300.000396
ORF1ab/nsp31283D1283DgaCgaT11AY.34.10.00051
ORF1ab/nsp31283D1283DgaCgaT11AY.4.10.000737
ORF1ab/nsp31283D1283DgaCgaT11AY.4.30.000842
ORF1ab/nsp31283D1283DgaCgaT11AY.5.30.000337
ORF1ab/nsp31283D1283DgaCgaT11AY.5.40.000277
ORF1ab/nsp31283D1283DgaCgaT11AY.540.000095
ORF1ab/nsp31283D1283DgaCgaT11AY.550.000917
ORF1ab/nsp31283D1283DgaCgaT11AY.590.00053
ORF1ab/nsp31283D1283DgaCgaT11AY.740.000116
ORF1ab/nsp31283D1283DgaCgaT11AY.75.10.00018
ORF1ab/nsp31283D1283DgaCgaT11AY.820.001357
ORF1ab/nsp31283D1283DgaCgaT11AY.850.000427
ORF1ab/nsp31283D1283DgaCgaT11AY.870.000833
ORF1ab/nsp31283D1283DgaCgaT11AY.910.00073
ORF1ab/nsp31283D1283DgaCgaT11AY.950.000761
ORF1ab/nsp31283D1283DgaCgaT11AY.980.000079
ORF1ab/nsp31283D1283DgaCgaT11B0.000128
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.10.000327
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.1180.010204
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.1720.018182
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.1760.000439
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.1920.002309
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.1980.001468
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.2200.001859
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.250.000569
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.2630.001558
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.3170.000412
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.330.000421
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.3660.015873
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.3690.000446
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.390.00051
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.4120.007634
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.4340.000349
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.4480.002033
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.460.004367
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.5250.005464
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.700.000341
ORF1ab/nsp31283D1283DgaCgaT11B.1.1110.001175
ORF1ab/nsp31283D1283DgaCgaT11B.1.1260.001276
ORF1ab/nsp31283D1283DgaCgaT11B.1.1280.000635
ORF1ab/nsp31283D1283DgaCgaT11B.1.160.160.000929
ORF1ab/nsp31283D1283DgaCgaT11B.1.177.210.000076
ORF1ab/nsp31283D1283DgaCgaT11B.1.177.320.00135
ORF1ab/nsp31283D1283DgaCgaT11B.1.177.620.001192
ORF1ab/nsp31283D1283DgaCgaT11B.1.2370.004975
ORF1ab/nsp31283D1283DgaCgaT11B.1.258.170.000104
ORF1ab/nsp31283D1283DgaCgaT11B.1.2980.002114
ORF1ab/nsp31283D1283DgaCgaT11B.1.36.290.000517
ORF1ab/nsp31283D1283DgaCgaT11B.1.36.80.001
ORF1ab/nsp31283D1283DgaCgaT11B.1.4090.000781
ORF1ab/nsp31283D1283DgaCgaT11B.1.4390.005917
ORF1ab/nsp31283D1283DgaCgaT11B.1.4560.003268
ORF1ab/nsp31283D1283DgaCgaT11B.1.4710.002732
ORF1ab/nsp31283D1283DgaCgaT11B.1.4990.00105
ORF1ab/nsp31283D1283DgaCgaT11B.1.5010.007353
ORF1ab/nsp31283D1283DgaCgaT11B.1.5580.004566
ORF1ab/nsp31283D1283DgaCgaT11B.1.5640.000426
ORF1ab/nsp31283D1283DgaCgaT11B.1.5750.000303
ORF1ab/nsp31283D1283DgaCgaT11B.1.5800.004065
ORF1ab/nsp31283D1283DgaCgaT11B.1.5880.00091
ORF1ab/nsp31283D1283DgaCgaT11B.1.6180.004032
ORF1ab/nsp31283D1283DgaCgaT11B.1.6200.000946
ORF1ab/nsp31283D1283DgaCgaT11B.1.6210.000089
ORF1ab/nsp31283D1283DgaCgaT11B.1.6340.003425
ORF1ab/nsp31283D1283DgaCgaT11C.180.002591
ORF1ab/nsp31283D1283DgaCgaT11C.350.000774
ORF1ab/nsp31283D1283DgaCgaT11N.40.004255
ORF1ab/nsp31283D1283DgaCgaT11P.1.150.000232
ORF1ab/nsp31283D1283DgaCgaT11P.1.70.000319
ORF1ab/nsp31283D1283DgaCgaT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.