CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = D1242D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31242D1242DD2060DsyngaCgaT5025502516443-6445

Details of the mutation D1242D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31242D1242DgaCgaT50255025All0.000961
ORF1ab/nsp31242D1242DgaCgaT10241024B.1.1.2770.776935
ORF1ab/nsp31242D1242DgaCgaT706706B.1.617.20.002658
ORF1ab/nsp31242D1242DgaCgaT544544AY.430.00241
ORF1ab/nsp31242D1242DgaCgaT448448B.1.1.70.000401
ORF1ab/nsp31242D1242DgaCgaT289289B.1.3980.860119
ORF1ab/nsp31242D1242DgaCgaT162162K.31
ORF1ab/nsp31242D1242DgaCgaT161161AY.250.000968
ORF1ab/nsp31242D1242DgaCgaT114114B.10.001044
ORF1ab/nsp31242D1242DgaCgaT103103B.1.1.5190.00409
ORF1ab/nsp31242D1242DgaCgaT9797AY.30.000965
ORF1ab/nsp31242D1242DgaCgaT8989B.1.1.260.465969
ORF1ab/nsp31242D1242DgaCgaT8787AY.40.000135
ORF1ab/nsp31242D1242DgaCgaT8787B.1.5880.079163
ORF1ab/nsp31242D1242DgaCgaT6565B.1.10.001179
ORF1ab/nsp31242D1242DgaCgaT6565B.1.5690.942029
ORF1ab/nsp31242D1242DgaCgaT6262AY.1030.000385
ORF1ab/nsp31242D1242DgaCgaT6161B.1.2340.008049
ORF1ab/nsp31242D1242DgaCgaT6060AY.440.000365
ORF1ab/nsp31242D1242DgaCgaT4444B.1.5960.003834
ORF1ab/nsp31242D1242DgaCgaT4242AY.1000.001932
ORF1ab/nsp31242D1242DgaCgaT4141AY.390.001013
ORF1ab/nsp31242D1242DgaCgaT4141B.1.4290.000965
ORF1ab/nsp31242D1242DgaCgaT3636AY.4.20.000781
ORF1ab/nsp31242D1242DgaCgaT3434A.2.50.016966
ORF1ab/nsp31242D1242DgaCgaT3333AY.420.001328
ORF1ab/nsp31242D1242DgaCgaT3232B.1.1.2840.003437
ORF1ab/nsp31242D1242DgaCgaT2323B.1.258.170.002391
ORF1ab/nsp31242D1242DgaCgaT2121AY.640.0125
ORF1ab/nsp31242D1242DgaCgaT2121B.1.360.003064
ORF1ab/nsp31242D1242DgaCgaT1414AY.200.000544
ORF1ab/nsp31242D1242DgaCgaT1414B.1.6370.001023
ORF1ab/nsp31242D1242DgaCgaT1313B.1.5260.000306
ORF1ab/nsp31242D1242DgaCgaT1313B.1.6210.001151
ORF1ab/nsp31242D1242DgaCgaT1212AY.260.00034
ORF1ab/nsp31242D1242DgaCgaT1212C.340.444444
ORF1ab/nsp31242D1242DgaCgaT1111AY.50.000227
ORF1ab/nsp31242D1242DgaCgaT1010AY.750.00056
ORF1ab/nsp31242D1242DgaCgaT99AY.1170.000761
ORF1ab/nsp31242D1242DgaCgaT99AY.60.00037
ORF1ab/nsp31242D1242DgaCgaT99B.1.1770.000119
ORF1ab/nsp31242D1242DgaCgaT99B.1.2210.000639
ORF1ab/nsp31242D1242DgaCgaT99B.1.5950.002349
ORF1ab/nsp31242D1242DgaCgaT99P.10.000142
ORF1ab/nsp31242D1242DgaCgaT88AY.1190.000282
ORF1ab/nsp31242D1242DgaCgaT88AY.230.000558
ORF1ab/nsp31242D1242DgaCgaT88AY.460.000833
ORF1ab/nsp31242D1242DgaCgaT88AY.5.40.002214
ORF1ab/nsp31242D1242DgaCgaT88B.1.1600.00025
ORF1ab/nsp31242D1242DgaCgaT88B.1.177.540.004851
ORF1ab/nsp31242D1242DgaCgaT88B.1.20.00007
ORF1ab/nsp31242D1242DgaCgaT88B.1.4270.000404
ORF1ab/nsp31242D1242DgaCgaT66AY.1210.000812
ORF1ab/nsp31242D1242DgaCgaT66B.1.1.3180.001811
ORF1ab/nsp31242D1242DgaCgaT55AY.470.000156
ORF1ab/nsp31242D1242DgaCgaT55B.1.1490.017123
ORF1ab/nsp31242D1242DgaCgaT55B.1.160.280.01462
ORF1ab/nsp31242D1242DgaCgaT55B.1.4520.068493
ORF1ab/nsp31242D1242DgaCgaT55B.1.5250.000566
ORF1ab/nsp31242D1242DgaCgaT55C.370.00058
ORF1ab/nsp31242D1242DgaCgaT55P.1.140.000239
ORF1ab/nsp31242D1242DgaCgaT44AY.1100.000451
ORF1ab/nsp31242D1242DgaCgaT44AY.1160.001147
ORF1ab/nsp31242D1242DgaCgaT44AY.360.000593
ORF1ab/nsp31242D1242DgaCgaT44AY.450.000487
ORF1ab/nsp31242D1242DgaCgaT44AY.670.001857
ORF1ab/nsp31242D1242DgaCgaT44B.1.1.250.002274
ORF1ab/nsp31242D1242DgaCgaT44B.1.177.40.000844
ORF1ab/nsp31242D1242DgaCgaT44B.1.177.580.005326
ORF1ab/nsp31242D1242DgaCgaT44B.1.2580.000266
ORF1ab/nsp31242D1242DgaCgaT33AY.1200.000112
ORF1ab/nsp31242D1242DgaCgaT33AY.120.2.10.001495
ORF1ab/nsp31242D1242DgaCgaT33AY.290.000047
ORF1ab/nsp31242D1242DgaCgaT33AY.330.0002
ORF1ab/nsp31242D1242DgaCgaT33AY.410.000882
ORF1ab/nsp31242D1242DgaCgaT33AY.46.40.000494
ORF1ab/nsp31242D1242DgaCgaT33AY.910.002191
ORF1ab/nsp31242D1242DgaCgaT33B0.000383
ORF1ab/nsp31242D1242DgaCgaT33B.1.1.100.003344
ORF1ab/nsp31242D1242DgaCgaT33B.1.1.2140.000166
ORF1ab/nsp31242D1242DgaCgaT33B.1.177.70.000495
ORF1ab/nsp31242D1242DgaCgaT33B.1.617.10.000387
ORF1ab/nsp31242D1242DgaCgaT33P.1.70.000958
ORF1ab/nsp31242D1242DgaCgaT22AY.1020.000053
ORF1ab/nsp31242D1242DgaCgaT22AY.1130.000285
ORF1ab/nsp31242D1242DgaCgaT22AY.1140.000462
ORF1ab/nsp31242D1242DgaCgaT22AY.90.000135
ORF1ab/nsp31242D1242DgaCgaT22AY.98.10.000097
ORF1ab/nsp31242D1242DgaCgaT22AY.990.002099
ORF1ab/nsp31242D1242DgaCgaT22B.1.1.2400.00939
ORF1ab/nsp31242D1242DgaCgaT22B.1.1.280.000622
ORF1ab/nsp31242D1242DgaCgaT22B.1.1.3160.00185
ORF1ab/nsp31242D1242DgaCgaT22B.1.1.3260.003521
ORF1ab/nsp31242D1242DgaCgaT22B.1.2430.000139
ORF1ab/nsp31242D1242DgaCgaT22B.1.3960.001411
ORF1ab/nsp31242D1242DgaCgaT22B.1.4090.001563
ORF1ab/nsp31242D1242DgaCgaT22B.1.438.10.000215
ORF1ab/nsp31242D1242DgaCgaT22B.1.4800.004975
ORF1ab/nsp31242D1242DgaCgaT22B.1.5750.000607
ORF1ab/nsp31242D1242DgaCgaT22B.130.090909
ORF1ab/nsp31242D1242DgaCgaT22D.20.00015
ORF1ab/nsp31242D1242DgaCgaT22K.10.047619
ORF1ab/nsp31242D1242DgaCgaT11A.20.000662
ORF1ab/nsp31242D1242DgaCgaT11A.2.5.10.004808
ORF1ab/nsp31242D1242DgaCgaT11AD.20.000219
ORF1ab/nsp31242D1242DgaCgaT11AY.1010.00049
ORF1ab/nsp31242D1242DgaCgaT11AY.1050.000643
ORF1ab/nsp31242D1242DgaCgaT11AY.1110.000183
ORF1ab/nsp31242D1242DgaCgaT11AY.120.10.000321
ORF1ab/nsp31242D1242DgaCgaT11AY.340.000097
ORF1ab/nsp31242D1242DgaCgaT11AY.39.10.00004
ORF1ab/nsp31242D1242DgaCgaT11AY.4.50.000107
ORF1ab/nsp31242D1242DgaCgaT11AY.46.50.000198
ORF1ab/nsp31242D1242DgaCgaT11AY.520.000814
ORF1ab/nsp31242D1242DgaCgaT11AY.580.000907
ORF1ab/nsp31242D1242DgaCgaT11AY.610.000105
ORF1ab/nsp31242D1242DgaCgaT11AY.70.000196
ORF1ab/nsp31242D1242DgaCgaT11AY.710.000475
ORF1ab/nsp31242D1242DgaCgaT11AY.890.004902
ORF1ab/nsp31242D1242DgaCgaT11AY.9.10.000084
ORF1ab/nsp31242D1242DgaCgaT11AY.9.20.000037
ORF1ab/nsp31242D1242DgaCgaT11AY.920.000287
ORF1ab/nsp31242D1242DgaCgaT11AY.980.000079
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.1640.005155
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.1760.000439
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.1890.001513
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.2940.001266
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.3110.000358
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.3120.001912
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.3720.000689
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.4320.001266
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.4350.034483
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.500.000679
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.5170.006803
ORF1ab/nsp31242D1242DgaCgaT11B.1.1.5250.005464
ORF1ab/nsp31242D1242DgaCgaT11B.1.120.008
ORF1ab/nsp31242D1242DgaCgaT11B.1.130.002375
ORF1ab/nsp31242D1242DgaCgaT11B.1.160.240.004425
ORF1ab/nsp31242D1242DgaCgaT11B.1.2400.000216
ORF1ab/nsp31242D1242DgaCgaT11B.1.2670.018519
ORF1ab/nsp31242D1242DgaCgaT11B.1.3400.004292
ORF1ab/nsp31242D1242DgaCgaT11B.1.3510.00003
ORF1ab/nsp31242D1242DgaCgaT11B.1.351.20.000303
ORF1ab/nsp31242D1242DgaCgaT11B.1.36.170.000494
ORF1ab/nsp31242D1242DgaCgaT11B.1.362.20.004717
ORF1ab/nsp31242D1242DgaCgaT11B.1.4210.007463
ORF1ab/nsp31242D1242DgaCgaT11B.1.466.20.000391
ORF1ab/nsp31242D1242DgaCgaT11B.1.5640.000426
ORF1ab/nsp31242D1242DgaCgaT11B.1.5720.025
ORF1ab/nsp31242D1242DgaCgaT11B.1.5760.000907
ORF1ab/nsp31242D1242DgaCgaT11C.180.002591
ORF1ab/nsp31242D1242DgaCgaT11G.10.041667
ORF1ab/nsp31242D1242DgaCgaT11N.40.004255
ORF1ab/nsp31242D1242DgaCgaT11P.1.170.000162
ORF1ab/nsp31242D1242DgaCgaT11P.50.013699
ORF1ab/nsp31242D1242DgaCgaT11Q.20.000613
ORF1ab/nsp31242D1242DgaCgaT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.