CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1031 | D1031D | D1849D | syn | gaC | gaT | 23092 | 23092 | 1 | 5810-5812 |
Details of the mutation D1031D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 23092 | 23092 | All | 0.004417 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4051 | 4051 | AY.103 | 0.025153 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3844 | 3844 | B.1.617.2 | 0.014474 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3111 | 3111 | AY.100 | 0.143127 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2363 | 2363 | B.1.1.7 | 0.002115 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 763 | 763 | AY.44 | 0.004644 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 718 | 718 | AY.4 | 0.001118 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 664 | 664 | AY.25 | 0.003994 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 471 | 471 | B.1.2 | 0.004147 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 416 | 416 | B.1.36.27 | 0.317557 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 315 | 315 | AY.77 | 0.35513 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 310 | 310 | AY.43 | 0.001373 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 244 | 244 | B.1.1.372 | 0.168044 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 235 | 235 | B.1.351.3 | 0.20596 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 197 | 197 | B.1 | 0.001804 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 176 | 176 | AY.10 | 0.09327 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 176 | 176 | AY.120 | 0.006543 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 176 | 176 | B.1.628 | 0.062016 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 172 | 172 | AY.119 | 0.006073 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 162 | 162 | P.1 | 0.002552 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 160 | 160 | B.1.234 | 0.021111 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 151 | 151 | B.1.177.57 | 0.042428 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 135 | 135 | Q.1 | 0.017054 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 134 | 134 | AY.3 | 0.001333 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 133 | 133 | B.1.1.222 | 0.027132 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 131 | 131 | B.1.36 | 0.019113 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 128 | 128 | B.1.177 | 0.001685 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 119 | 119 | C.38 | 0.959677 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 117 | 117 | B.1.1.434 | 0.040781 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 117 | 117 | B.1.177.7 | 0.019288 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 112 | 112 | B.1.258.17 | 0.011645 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 109 | 109 | AY.102 | 0.00289 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 109 | 109 | AY.75 | 0.006106 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 106 | 106 | B.1.1 | 0.001923 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 96 | 96 | B.1.160 | 0.002994 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 91 | 91 | B.1.1.519 | 0.003614 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 85 | 85 | B.1.429 | 0.002 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 83 | 83 | B.1.1.234 | 1 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 76 | 76 | B.1.406 | 0.460606 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 72 | 72 | B.1.525 | 0.008148 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 70 | 70 | B.1.351 | 0.002081 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 60 | 60 | B.1.596 | 0.005228 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 58 | 58 | B.1.177.81 | 0.010981 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 58 | 58 | B.1.243 | 0.004036 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 53 | 53 | AY.29 | 0.000836 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 48 | 48 | AY.42 | 0.001931 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 45 | 45 | AY.46.6 | 0.003249 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 43 | 43 | B.1.526 | 0.001011 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 41 | 41 | AY.117 | 0.003465 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 39 | 39 | B.1.232 | 0.020956 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 38 | 38 | AY.5 | 0.000785 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 37 | 37 | AY.39 | 0.000914 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 37 | 37 | AY.4.2 | 0.000802 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 36 | 36 | AY.20 | 0.001399 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 35 | 35 | B.1.258.22 | 0.093333 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 31 | 31 | C.37 | 0.003598 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 30 | 30 | AY.9.2 | 0.001102 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 29 | 29 | AY.98 | 0.002291 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 29 | 29 | B.1.1.297 | 0.064877 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 28 | 28 | B.1.637 | 0.002046 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 26 | 26 | A.2.5.1 | 0.125 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 25 | 25 | AY.26 | 0.000708 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 25 | 25 | P.1.14 | 0.001195 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 25 | 25 | Q.8 | 0.004123 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 24 | 24 | AY.6 | 0.000987 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 24 | 24 | AY.61 | 0.002515 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 24 | 24 | AY.90 | 0.016427 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 23 | 23 | AY.23 | 0.001604 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 23 | 23 | AY.3.1 | 0.001961 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 23 | 23 | B.1.1.204 | 0.069909 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 22 | 22 | AY.75.1 | 0.003967 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 21 | 21 | B.1.258 | 0.001397 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 20 | 20 | AY.47 | 0.000622 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 20 | 20 | B.1.621 | 0.00177 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 19 | 19 | B.1.1.339 | 0.2 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 18 | 18 | AY.65 | 0.009595 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 17 | 17 | AY.39.1 | 0.000673 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 17 | 17 | AY.9 | 0.001149 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 17 | 17 | B.1.427 | 0.000858 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 16 | 16 | AY.14 | 0.001408 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 16 | 16 | AY.46 | 0.001665 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 16 | 16 | B.1.499 | 0.016807 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 16 | 16 | B.1.623 | 0.008584 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 15 | 15 | AY.99.2 | 0.001382 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 15 | 15 | B.1.36.1 | 0.017104 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 14 | 14 | AY.92 | 0.004022 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 14 | 14 | B.1.311 | 0.003844 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 13 | 13 | AY.33 | 0.000868 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 13 | 13 | AY.35 | 0.00303 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 13 | 13 | AY.36 | 0.001927 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 13 | 13 | AY.45 | 0.001582 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 13 | 13 | AY.5.3 | 0.004386 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 13 | 13 | B.1.1.306 | 0.005699 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 13 | 13 | P.1.9 | 0.0625 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 12 | 12 | B.1.1.37 | 0.002314 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 12 | 12 | B.1.305 | 0.025806 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 11 | 11 | B.1.409 | 0.008594 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 9 | 9 | AY.46.4 | 0.001481 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 9 | 9 | AY.53 | 0.002588 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 9 | 9 | B.1.1.317 | 0.003705 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 9 | 9 | B.1.177.60 | 0.001966 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 9 | 9 | B.1.258.4 | 0.031034 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 9 | 9 | B.1.367 | 0.007132 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 9 | 9 | B.1.380 | 0.059603 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 9 | 9 | B.1.561 | 0.003573 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 8 | 8 | AY.101 | 0.003923 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 8 | 8 | AY.81 | 0.015936 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 8 | 8 | AY.84 | 0.0035 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 8 | 8 | B.1.1.318 | 0.002414 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 8 | 8 | B.1.1.63 | 0.003086 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 8 | 8 | P.1.7 | 0.002554 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 7 | 7 | A.21 | 0.019391 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 7 | 7 | AY.19 | 0.007982 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 7 | 7 | B.1.1.207 | 0.008274 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 7 | 7 | B.1.1.366 | 0.111111 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 7 | 7 | B.1.14 | 0.122807 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | AY.106 | 0.002009 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | AY.107 | 0.002796 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | AY.111 | 0.001099 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | AY.32 | 0.003195 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | AY.4.4 | 0.002455 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | AY.40 | 0.005786 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | AY.46.2 | 0.003812 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | B | 0.000767 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | B.1.1.157 | 0.005479 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | B.1.456 | 0.019608 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | B.1.509 | 0.005195 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | AY.46.5 | 0.000992 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | AY.62 | 0.002179 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | AY.73 | 0.003327 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | AY.78 | 0.007704 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | B.1.1.50 | 0.003394 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | B.1.351.2 | 0.001513 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | B.1.36.31 | 0.008757 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 5 | 5 | Q.2 | 0.003067 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | A.24 | 0.285714 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | AY.23.1 | 0.001669 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | AY.24 | 0.001724 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | AY.51 | 0.003636 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | B.1.1.487 | 0.022346 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | B.1.1.525 | 0.021858 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | B.1.177.87 | 0.002911 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | B.1.470 | 0.005618 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | B.1.532 | 0.024845 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | N.4 | 0.017021 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.1.186 | 0.010309 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.1.192 | 0.006928 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.1.243 | 0.012245 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.1.288 | 0.005747 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.332 | 0.01049 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.397 | 0.014563 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.433 | 0.009585 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.618 | 0.012097 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | C.36.3.1 | 0.008152 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | AZ.3 | 0.00304 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.1.375 | 0.02381 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.258.19 | 0.014184 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.340 | 0.008584 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.403 | 0.006536 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.428.2 | 0.066667 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.505 | 0.008772 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.527 | 0.007407 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.566 | 0.038462 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | C.32 | 0.046512 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.125 | 0.010204 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.31 | 0.066667 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.463 | 0.0625 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.67 | 0.004566 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.160.19 | 0.035714 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.258.20 | 0.015873 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.258.23 | 0.02381 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.451 | 0.008197 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.498 | 0.020408 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | C.12 | 0.007194 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | C.33 | 0.058824 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | L.2 | 0.011364 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1031 | D1031D | gaC | gaT | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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