CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = C39del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp339C39delC857deldelTGC---404012834-2836

Details of the mutation C39del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp339C39delTGC---4040All0.000008
ORF1ab/nsp339C39delTGC---55B.10.000046
ORF1ab/nsp339C39delTGC---440.222222
ORF1ab/nsp339C39delTGC---44B.1.1.70.000004
ORF1ab/nsp339C39delTGC---33B.1.1.330.001263
ORF1ab/nsp339C39delTGC---33B.1.1.3480.002389
ORF1ab/nsp339C39delTGC---22B.1.10.000036
ORF1ab/nsp339C39delTGC---22B.1.4240.016129
ORF1ab/nsp339C39delTGC---22B.1.4290.000047
ORF1ab/nsp339C39delTGC---22N.60.014184
ORF1ab/nsp339C39delTGC---22P.10.000032
ORF1ab/nsp339C39delTGC---11AY.430.000004
ORF1ab/nsp339C39delTGC---11AY.60.000041
ORF1ab/nsp339C39delTGC---11AY.9.20.000037
ORF1ab/nsp339C39delTGC---11B.1.1.4160.000905
ORF1ab/nsp339C39delTGC---11B.1.1.460.004367
ORF1ab/nsp339C39delTGC---11B.1.1.700.000341
ORF1ab/nsp339C39delTGC---11B.1.177.510.004566
ORF1ab/nsp339C39delTGC---11B.1.20.000009
ORF1ab/nsp339C39delTGC---11B.1.5610.000397
ORF1ab/nsp339C39delTGC---11B.1.617.20.000004
ORF1ab/nsp339C39delTGC---11B.570.015152