CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = C39S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp339C39SC857SnonsyntGctCc730.4285712834-2836
ORF1ab/nsp339C39SC857SnonsynTgcAgc730.4285712834-2836
ORF1ab/nsp339C39SC857SnonsynTgCAgT710.1428572834-2836

Details of the mutation C39S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp339C39StGctCc37All0.000001
ORF1ab/nsp339C39STgcAgc37All0.000001
ORF1ab/nsp339C39STgCAgT17All0
ORF1ab/nsp339C39STgcAgc120.055556
ORF1ab/nsp339C39STgCAgT120.055556
ORF1ab/nsp339C39StGctCc11AY.40.000002
ORF1ab/nsp339C39STgcAgc11AY.420.00004
ORF1ab/nsp339C39STgcAgc11AY.430.000004
ORF1ab/nsp339C39StGctCc11B.1.1.1530.001095
ORF1ab/nsp339C39StGctCc11B.1.20.000009