CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = C39F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp339C39FC857FnonsyntGctTc19180.9473682834-2836
ORF1ab/nsp339C39FC857FnonsyntGCtTT1910.05263162834-2836

Details of the mutation C39F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp339C39FtGctTc1819All0.000003
ORF1ab/nsp339C39FtGCtTT119All0
ORF1ab/nsp339C39FtGctTc340.166667
ORF1ab/nsp339C39FtGCtTT140.055556
ORF1ab/nsp339C39FtGctTc22B.1.10.000036
ORF1ab/nsp339C39FtGctTc11AY.1030.000006
ORF1ab/nsp339C39FtGctTc11AY.330.000067
ORF1ab/nsp339C39FtGctTc11AY.40.000002
ORF1ab/nsp339C39FtGctTc11AY.4.2.10.000149
ORF1ab/nsp339C39FtGctTc11AY.460.000104
ORF1ab/nsp339C39FtGctTc11B0.000128
ORF1ab/nsp339C39FtGctTc11B.10.000009
ORF1ab/nsp339C39FtGctTc11B.1.1.5190.00004
ORF1ab/nsp339C39FtGctTc11B.1.1.70.000001
ORF1ab/nsp339C39FtGctTc11B.1.1770.000013
ORF1ab/nsp339C39FtGctTc11B.1.3110.000275
ORF1ab/nsp339C39FtGctTc11B.1.5950.000261
ORF1ab/nsp339C39FtGctTc11B.1.617.20.000004

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.