CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = C1421C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31421C1421CC2239CsyntgCtgT5115511516980-6982

Details of the mutation C1421C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31421C1421CtgCtgT51155115All0.000978
ORF1ab/nsp31421C1421CtgCtgT12091209AY.40.001882
ORF1ab/nsp31421C1421CtgCtgT10631063B.1.1.70.000952
ORF1ab/nsp31421C1421CtgCtgT324324B.1.20.002853
ORF1ab/nsp31421C1421CtgCtgT205205B.1.617.20.000772
ORF1ab/nsp31421C1421CtgCtgT172172AY.30.001711
ORF1ab/nsp31421C1421CtgCtgT160160B.1.2980.338266
ORF1ab/nsp31421C1421CtgCtgT158158AY.1200.005874
ORF1ab/nsp31421C1421CtgCtgT137137B.1.4700.192416
ORF1ab/nsp31421C1421CtgCtgT112112AY.1030.000695
ORF1ab/nsp31421C1421CtgCtgT8484AY.250.000505
ORF1ab/nsp31421C1421CtgCtgT8282P.10.001292
ORF1ab/nsp31421C1421CtgCtgT7575AY.46.40.012338
ORF1ab/nsp31421C1421CtgCtgT6464AY.4.20.001388
ORF1ab/nsp31421C1421CtgCtgT6262A.161
ORF1ab/nsp31421C1421CtgCtgT6262AY.120.20.079692
ORF1ab/nsp31421C1421CtgCtgT5555AY.440.000335
ORF1ab/nsp31421C1421CtgCtgT5353AY.1190.001871
ORF1ab/nsp31421C1421CtgCtgT4848B.10.00044
ORF1ab/nsp31421C1421CtgCtgT4646B.1.1770.000606
ORF1ab/nsp31421C1421CtgCtgT4646B.1.360.006711
ORF1ab/nsp31421C1421CtgCtgT4040AY.430.000177
ORF1ab/nsp31421C1421CtgCtgT3838B.1.1.5190.001509
ORF1ab/nsp31421C1421CtgCtgT3636B.1.36.290.018624
ORF1ab/nsp31421C1421CtgCtgT3030AY.1090.022189
ORF1ab/nsp31421C1421CtgCtgT2828AY.46.60.002022
ORF1ab/nsp31421C1421CtgCtgT2828B.1.177.70.004616
ORF1ab/nsp31421C1421CtgCtgT2828B.1.4290.000659
ORF1ab/nsp31421C1421CtgCtgT2727B.1.10.00049
ORF1ab/nsp31421C1421CtgCtgT2727B.1.3110.007414
ORF1ab/nsp31421C1421CtgCtgT2424AY.1210.003248
ORF1ab/nsp31421C1421CtgCtgT2323B.1.5260.000541
ORF1ab/nsp31421C1421CtgCtgT1818AY.1020.000477
ORF1ab/nsp31421C1421CtgCtgT1818B.1.2210.001279
ORF1ab/nsp31421C1421CtgCtgT1717B.1.5750.005158
ORF1ab/nsp31421C1421CtgCtgT1515P.1.10.004765
ORF1ab/nsp31421C1421CtgCtgT1414B.1.429.10.168675
ORF1ab/nsp31421C1421CtgCtgT1313AY.260.000368
ORF1ab/nsp31421C1421CtgCtgT1313B.1.4000.005577
ORF1ab/nsp31421C1421CtgCtgT1111B.1.177.210.000841
ORF1ab/nsp31421C1421CtgCtgT1111B.1.36.100.052632
ORF1ab/nsp31421C1421CtgCtgT1010AY.1160.002868
ORF1ab/nsp31421C1421CtgCtgT1010AY.200.000389
ORF1ab/nsp31421C1421CtgCtgT1010AY.290.000158
ORF1ab/nsp31421C1421CtgCtgT1010B.1.3510.000297
ORF1ab/nsp31421C1421CtgCtgT1010P.1.100.002695
ORF1ab/nsp31421C1421CtgCtgT99AY.60.00037
ORF1ab/nsp31421C1421CtgCtgT99B.1.177.600.001966
ORF1ab/nsp31421C1421CtgCtgT99B.1.2430.000626
ORF1ab/nsp31421C1421CtgCtgT77AY.1000.000322
ORF1ab/nsp31421C1421CtgCtgT77AY.3.10.000597
ORF1ab/nsp31421C1421CtgCtgT77AY.39.10.000277
ORF1ab/nsp31421C1421CtgCtgT77B.1.1600.000218
ORF1ab/nsp31421C1421CtgCtgT77B.1.160.260.016949
ORF1ab/nsp31421C1421CtgCtgT77B.1.4270.000353
ORF1ab/nsp31421C1421CtgCtgT66AY.230.000418
ORF1ab/nsp31421C1421CtgCtgT66AY.390.000148
ORF1ab/nsp31421C1421CtgCtgT66AY.740.000694
ORF1ab/nsp31421C1421CtgCtgT66B.1.6210.000531
ORF1ab/nsp31421C1421CtgCtgT55AY.120.2.10.002491
ORF1ab/nsp31421C1421CtgCtgT55AY.140.00044
ORF1ab/nsp31421C1421CtgCtgT55AY.270.000324
ORF1ab/nsp31421C1421CtgCtgT55AY.340.000485
ORF1ab/nsp31421C1421CtgCtgT55AY.450.000608
ORF1ab/nsp31421C1421CtgCtgT55AY.460.00052
ORF1ab/nsp31421C1421CtgCtgT55AY.98.10.000242
ORF1ab/nsp31421C1421CtgCtgT55B.1.1.3220.04386
ORF1ab/nsp31421C1421CtgCtgT55B.1.1470.003779
ORF1ab/nsp31421C1421CtgCtgT55B.1.2340.00066
ORF1ab/nsp31421C1421CtgCtgT55B.1.2360.010267
ORF1ab/nsp31421C1421CtgCtgT55B.1.2580.000333
ORF1ab/nsp31421C1421CtgCtgT55B.1.5770.003436
ORF1ab/nsp31421C1421CtgCtgT44AY.110.005355
ORF1ab/nsp31421C1421CtgCtgT44AY.420.000161
ORF1ab/nsp31421C1421CtgCtgT44AY.470.000124
ORF1ab/nsp31421C1421CtgCtgT44AY.610.000419
ORF1ab/nsp31421C1421CtgCtgT44AY.850.001709
ORF1ab/nsp31421C1421CtgCtgT44AY.990.004197
ORF1ab/nsp31421C1421CtgCtgT44AY.99.20.000369
ORF1ab/nsp31421C1421CtgCtgT44B.1.1.1390.090909
ORF1ab/nsp31421C1421CtgCtgT44B.1.1.5160.266667
ORF1ab/nsp31421C1421CtgCtgT44B.1.3960.002823
ORF1ab/nsp31421C1421CtgCtgT44C.370.000464
ORF1ab/nsp31421C1421CtgCtgT44Q.10.000505
ORF1ab/nsp31421C1421CtgCtgT33AV.10.015152
ORF1ab/nsp31421C1421CtgCtgT33AY.1060.001005
ORF1ab/nsp31421C1421CtgCtgT33AY.130.000483
ORF1ab/nsp31421C1421CtgCtgT33AY.4.50.000322
ORF1ab/nsp31421C1421CtgCtgT33AY.50.000062
ORF1ab/nsp31421C1421CtgCtgT33AY.75.10.000541
ORF1ab/nsp31421C1421CtgCtgT33AY.9.20.00011
ORF1ab/nsp31421C1421CtgCtgT33B.1.1.2840.000322
ORF1ab/nsp31421C1421CtgCtgT33B.1.1110.003525
ORF1ab/nsp31421C1421CtgCtgT33B.1.177.370.081081
ORF1ab/nsp31421C1421CtgCtgT33B.1.2400.000647
ORF1ab/nsp31421C1421CtgCtgT33B.1.36.350.007812
ORF1ab/nsp31421C1421CtgCtgT33B.1.466.20.001174
ORF1ab/nsp31421C1421CtgCtgT33B.1.5250.000339
ORF1ab/nsp31421C1421CtgCtgT33B.1.5820.001472
ORF1ab/nsp31421C1421CtgCtgT33B.1.5950.000783
ORF1ab/nsp31421C1421CtgCtgT33D.20.000225
ORF1ab/nsp31421C1421CtgCtgT33P.1.140.000143
ORF1ab/nsp31421C1421CtgCtgT33P.1.60.005837
ORF1ab/nsp31421C1421CtgCtgT33Q.80.000495
ORF1ab/nsp31421C1421CtgCtgT22A0.000774
ORF1ab/nsp31421C1421CtgCtgT22A.23.10.001408
ORF1ab/nsp31421C1421CtgCtgT22AY.1130.000285
ORF1ab/nsp31421C1421CtgCtgT22AY.116.10.000623
ORF1ab/nsp31421C1421CtgCtgT22AY.410.000588
ORF1ab/nsp31421C1421CtgCtgT22AY.5.30.000675
ORF1ab/nsp31421C1421CtgCtgT22AY.540.000191
ORF1ab/nsp31421C1421CtgCtgT22AY.550.001835
ORF1ab/nsp31421C1421CtgCtgT22AY.90.000135
ORF1ab/nsp31421C1421CtgCtgT22AZ.20.001642
ORF1ab/nsp31421C1421CtgCtgT22B.1.1.2140.000111
ORF1ab/nsp31421C1421CtgCtgT22B.1.1.3350.025974
ORF1ab/nsp31421C1421CtgCtgT22B.1.1.3480.001592
ORF1ab/nsp31421C1421CtgCtgT22B.1.177.430.002954
ORF1ab/nsp31421C1421CtgCtgT22B.1.258.170.000208
ORF1ab/nsp31421C1421CtgCtgT22B.1.258.30.00335
ORF1ab/nsp31421C1421CtgCtgT22B.1.4560.006536
ORF1ab/nsp31421C1421CtgCtgT22B.1.5170.000854
ORF1ab/nsp31421C1421CtgCtgT22B.1.6370.000146
ORF1ab/nsp31421C1421CtgCtgT22C.350.001548
ORF1ab/nsp31421C1421CtgCtgT22P.1.70.000639
ORF1ab/nsp31421C1421CtgCtgT11A.2.50.000499
ORF1ab/nsp31421C1421CtgCtgT11AY.1010.00049
ORF1ab/nsp31421C1421CtgCtgT11AY.1110.000183
ORF1ab/nsp31421C1421CtgCtgT11AY.1170.000085
ORF1ab/nsp31421C1421CtgCtgT11AY.1180.000063
ORF1ab/nsp31421C1421CtgCtgT11AY.320.000532
ORF1ab/nsp31421C1421CtgCtgT11AY.330.000067
ORF1ab/nsp31421C1421CtgCtgT11AY.350.000233
ORF1ab/nsp31421C1421CtgCtgT11AY.400.000964
ORF1ab/nsp31421C1421CtgCtgT11AY.530.000288
ORF1ab/nsp31421C1421CtgCtgT11AY.590.00053
ORF1ab/nsp31421C1421CtgCtgT11AY.670.000464
ORF1ab/nsp31421C1421CtgCtgT11AY.7.10.000113
ORF1ab/nsp31421C1421CtgCtgT11AY.700.000209
ORF1ab/nsp31421C1421CtgCtgT11AY.710.000475
ORF1ab/nsp31421C1421CtgCtgT11AY.750.000056
ORF1ab/nsp31421C1421CtgCtgT11AY.820.001357
ORF1ab/nsp31421C1421CtgCtgT11AY.840.000437
ORF1ab/nsp31421C1421CtgCtgT11AY.980.000079
ORF1ab/nsp31421C1421CtgCtgT11B0.000128
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.1100.090909
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.2160.00089
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.2210.010101
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.250.000569
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.2650.003155
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.3020.002075
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.3040.002809
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.3160.000925
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.3170.000412
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.3280.016949
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.330.000421
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.3670.055556
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.4020.011111
ORF1ab/nsp31421C1421CtgCtgT11B.1.1.4130.006897
ORF1ab/nsp31421C1421CtgCtgT11B.1.110.30.000718
ORF1ab/nsp31421C1421CtgCtgT11B.1.1190.010526
ORF1ab/nsp31421C1421CtgCtgT11B.1.1260.001276
ORF1ab/nsp31421C1421CtgCtgT11B.1.1570.002985
ORF1ab/nsp31421C1421CtgCtgT11B.1.177.100.000878
ORF1ab/nsp31421C1421CtgCtgT11B.1.177.40.000211
ORF1ab/nsp31421C1421CtgCtgT11B.1.177.410.0025
ORF1ab/nsp31421C1421CtgCtgT11B.1.177.420.000894
ORF1ab/nsp31421C1421CtgCtgT11B.1.177.790.002342
ORF1ab/nsp31421C1421CtgCtgT11B.1.177.830.001481
ORF1ab/nsp31421C1421CtgCtgT11B.1.177.870.000728
ORF1ab/nsp31421C1421CtgCtgT11B.1.2050.02381
ORF1ab/nsp31421C1421CtgCtgT11B.1.2180.005155
ORF1ab/nsp31421C1421CtgCtgT11B.1.258.220.002667
ORF1ab/nsp31421C1421CtgCtgT11B.1.3320.003497
ORF1ab/nsp31421C1421CtgCtgT11B.1.3360.002439
ORF1ab/nsp31421C1421CtgCtgT11B.1.351.20.000303
ORF1ab/nsp31421C1421CtgCtgT11B.1.351.30.000876
ORF1ab/nsp31421C1421CtgCtgT11B.1.36.10.00114
ORF1ab/nsp31421C1421CtgCtgT11B.1.36.340.021277
ORF1ab/nsp31421C1421CtgCtgT11B.1.3600.012658
ORF1ab/nsp31421C1421CtgCtgT11B.1.3690.000285
ORF1ab/nsp31421C1421CtgCtgT11B.1.3970.004854
ORF1ab/nsp31421C1421CtgCtgT11B.1.4160.001269
ORF1ab/nsp31421C1421CtgCtgT11B.1.4210.007463
ORF1ab/nsp31421C1421CtgCtgT11B.1.4280.00102
ORF1ab/nsp31421C1421CtgCtgT11B.1.438.10.000107
ORF1ab/nsp31421C1421CtgCtgT11B.1.4390.005917
ORF1ab/nsp31421C1421CtgCtgT11B.1.4650.003802
ORF1ab/nsp31421C1421CtgCtgT11B.1.4680.005714
ORF1ab/nsp31421C1421CtgCtgT11B.1.4930.025641
ORF1ab/nsp31421C1421CtgCtgT11B.1.5610.000397
ORF1ab/nsp31421C1421CtgCtgT11B.1.564.10.001577
ORF1ab/nsp31421C1421CtgCtgT11B.1.5960.000087
ORF1ab/nsp31421C1421CtgCtgT11B.1.6050.005952
ORF1ab/nsp31421C1421CtgCtgT11B.1.617.10.000129
ORF1ab/nsp31421C1421CtgCtgT11B.1.6190.000871
ORF1ab/nsp31421C1421CtgCtgT11B.1.6250.002353
ORF1ab/nsp31421C1421CtgCtgT11B.30.000831
ORF1ab/nsp31421C1421CtgCtgT11B.4.50.011905
ORF1ab/nsp31421C1421CtgCtgT11C.36.30.000567
ORF1ab/nsp31421C1421CtgCtgT11C.37.10.002618
ORF1ab/nsp31421C1421CtgCtgT11P.1.150.000232
ORF1ab/nsp31421C1421CtgCtgT11P.1.170.000162
ORF1ab/nsp31421C1421CtgCtgT11P.20.000187
ORF1ab/nsp31421C1421CtgCtgT11Q.30.000145
ORF1ab/nsp31421C1421CtgCtgT11R.10.00009