CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = C1246del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31246C1246delC2064deldelTGT---57857816455-6457

Details of the mutation C1246del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31246C1246delTGT---578578All0.000111
ORF1ab/nsp31246C1246delTGT---525525L.11
ORF1ab/nsp31246C1246delTGT---1313B.10.000119
ORF1ab/nsp31246C1246delTGT---77B.1.1.70.000006
ORF1ab/nsp31246C1246delTGT---66B.1.1.100.006689
ORF1ab/nsp31246C1246delTGT---44B.1.1.5190.000159
ORF1ab/nsp31246C1246delTGT---22AY.40.000003
ORF1ab/nsp31246C1246delTGT---22AY.470.000062
ORF1ab/nsp31246C1246delTGT---22B.1.10.000036
ORF1ab/nsp31246C1246delTGT---11AY.140.000088
ORF1ab/nsp31246C1246delTGT---11AY.250.000006
ORF1ab/nsp31246C1246delTGT---11AY.390.000025
ORF1ab/nsp31246C1246delTGT---11AY.4.50.000107
ORF1ab/nsp31246C1246delTGT---11AY.660.00107
ORF1ab/nsp31246C1246delTGT---11AY.990.001049
ORF1ab/nsp31246C1246delTGT---11B0.000128
ORF1ab/nsp31246C1246delTGT---11B.1.1.1330.008475
ORF1ab/nsp31246C1246delTGT---11B.1.1.3480.000796
ORF1ab/nsp31246C1246delTGT---11B.1.1770.000013
ORF1ab/nsp31246C1246delTGT---11B.1.177.510.004566
ORF1ab/nsp31246C1246delTGT---11B.1.177.620.001192
ORF1ab/nsp31246C1246delTGT---11B.1.177.70.000165
ORF1ab/nsp31246C1246delTGT---11B.1.177.830.001481
ORF1ab/nsp31246C1246delTGT---11B.1.20.000009
ORF1ab/nsp31246C1246delTGT---11B.1.617.20.000004
ORF1ab/nsp31246C1246delTGT---11P.10.000016