CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = C1223Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31223C1223YC2041YnonsyntGctAc5135080.9902536386-6388
ORF1ab/nsp31223C1223YC2041YnonsyntGCtAT51350.009746596386-6388

Details of the mutation C1223Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31223C1223YtGctAc508513All0.000097
ORF1ab/nsp31223C1223YtGCtAT5513All0.000001
ORF1ab/nsp31223C1223YtGctAc142142B.1.20.00125
ORF1ab/nsp31223C1223YtGctAc9090B.1.1.3630.538922
ORF1ab/nsp31223C1223YtGctAc4545B.1.617.20.000169
ORF1ab/nsp31223C1223YtGctAc3737B.1.1.70.000033
ORF1ab/nsp31223C1223YtGctAc2727AY.40.000042
ORF1ab/nsp31223C1223YtGctAc2424B.1.2210.001705
ORF1ab/nsp31223C1223YtGctAc2121B.1.4270.00106
ORF1ab/nsp31223C1223YtGctAc1819AY.440.00011
ORF1ab/nsp31223C1223YtGCtAT119AY.440.000006
ORF1ab/nsp31223C1223YtGctAc1616AY.1020.000424
ORF1ab/nsp31223C1223YtGctAc88B.10.000073
ORF1ab/nsp31223C1223YtGctAc66AY.260.00017
ORF1ab/nsp31223C1223YtGctAc55AY.470.000156
ORF1ab/nsp31223C1223YtGctAc55AY.9.20.000184
ORF1ab/nsp31223C1223YtGctAc44AY.1030.000025
ORF1ab/nsp31223C1223YtGctAc44AY.16.10.00188
ORF1ab/nsp31223C1223YtGctAc44AY.390.000099
ORF1ab/nsp31223C1223YtGctAc44B.1.2580.000266
ORF1ab/nsp31223C1223YtGCtAT34P.10.000047
ORF1ab/nsp31223C1223YtGctAc14P.10.000016
ORF1ab/nsp31223C1223YtGctAc33AY.430.000013
ORF1ab/nsp31223C1223YtGctAc33B.1.10.000054
ORF1ab/nsp31223C1223YtGctAc22AY.1130.000285
ORF1ab/nsp31223C1223YtGctAc22AY.1190.000071
ORF1ab/nsp31223C1223YtGctAc22AY.350.000466
ORF1ab/nsp31223C1223YtGctAc22AY.460.000208
ORF1ab/nsp31223C1223YtGctAc22B.1.1.3060.000877
ORF1ab/nsp31223C1223YtGctAc22B.1.3510.000059
ORF1ab/nsp31223C1223YtGctAc22B.1.4740.003802
ORF1ab/nsp31223C1223YtGctAc22B.1.5960.000174
ORF1ab/nsp31223C1223YtGctAc22P.1.160.000748
ORF1ab/nsp31223C1223YtGctAc22Q.80.00033
ORF1ab/nsp31223C1223YtGctAc11AY.1100.000113
ORF1ab/nsp31223C1223YtGctAc11AY.1210.000135
ORF1ab/nsp31223C1223YtGctAc11AY.130.000161
ORF1ab/nsp31223C1223YtGctAc11AY.250.000006
ORF1ab/nsp31223C1223YtGctAc11AY.270.000065
ORF1ab/nsp31223C1223YtGctAc11AY.290.000016
ORF1ab/nsp31223C1223YtGctAc11AY.30.00001
ORF1ab/nsp31223C1223YtGctAc11AY.50.000021
ORF1ab/nsp31223C1223YtGctAc11AY.650.000533
ORF1ab/nsp31223C1223YtGctAc11AY.680.000274
ORF1ab/nsp31223C1223YtGctAc11AY.70.000196
ORF1ab/nsp31223C1223YtGctAc11AY.980.000079
ORF1ab/nsp31223C1223YtGctAc11AY.99.10.001553
ORF1ab/nsp31223C1223YtGctAc11B.1.1.2040.00304
ORF1ab/nsp31223C1223YtGctAc11B.1.1.2140.000055
ORF1ab/nsp31223C1223YtGctAc11B.1.1.290.010309
ORF1ab/nsp31223C1223YtGctAc11B.1.1600.000031
ORF1ab/nsp31223C1223YtGctAc11B.1.258.170.000104
ORF1ab/nsp31223C1223YtGctAc11B.1.3690.000285
ORF1ab/nsp31223C1223YtGctAc11B.1.5950.000261
ORF1ab/nsp31223C1223YtGctAc11B.400.000364
ORF1ab/nsp31223C1223YtGCtAT11P.1.10.10.00813