CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A994del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3994A994del1A1812del1delgCtg-t23190.8260875699-5701
ORF1ab/nsp3994A994del1A1812del1delGct-ct2320.08695655699-5701
ORF1ab/nsp3994A994del1A1812del1delgcTgc-2310.04347835699-5701
ORF1ab/nsp3994A994del1A1812del1delGCtA-t2310.04347835699-5701

Details of the mutation A994del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3994A994del1gCtg-t1923All0.000004
ORF1ab/nsp3994A994del1Gct-ct223All0
ORF1ab/nsp3994A994del1GCtA-t123All0
ORF1ab/nsp3994A994del1gcTgc-123All0
ORF1ab/nsp3994A994del1gCtg-t34B.1.617.20.000011
ORF1ab/nsp3994A994del1gcTgc-14B.1.617.20.000004
ORF1ab/nsp3994A994del1gCtg-t33B.10.000027
ORF1ab/nsp3994A994del1gCtg-t33B.1.2470.044776
ORF1ab/nsp3994A994del1gCtg-t22B.1.360.000292
ORF1ab/nsp3994A994del1gCtg-t11AY.1030.000006
ORF1ab/nsp3994A994del1gCtg-t11AY.160.00038
ORF1ab/nsp3994A994del1Gct-ct11AY.250.000006
ORF1ab/nsp3994A994del1gCtg-t11AY.440.000006
ORF1ab/nsp3994A994del1gCtg-t11B.1.10.000018
ORF1ab/nsp3994A994del1gCtg-t11B.1.1.1210.002427
ORF1ab/nsp3994A994del1gCtg-t11B.1.1.4480.002033
ORF1ab/nsp3994A994del1gCtg-t11B.1.2210.000071
ORF1ab/nsp3994A994del1GCtA-t11B.1.5380.008065
ORF1ab/nsp3994A994del1Gct-ct11B.1.5820.000491
ORF1ab/nsp3994A994del1gCtg-t11B.1.617.10.000129