CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A994A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3994A994AA1812AsyngcTgcC209119000.9086565699-5701
ORF1ab/nsp3994A994AA1812AsyngcTgcA20911090.05212825699-5701
ORF1ab/nsp3994A994AA1812AsyngcTgcG2091820.03921575699-5701

Details of the mutation A994A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3994A994AgcTgcC19002091All0.000363
ORF1ab/nsp3994A994AgcTgcA1092091All0.000021
ORF1ab/nsp3994A994AgcTgcG822091All0.000016
ORF1ab/nsp3994A994AgcTgcC15581558B.1.619.10.999359
ORF1ab/nsp3994A994AgcTgcC95191B.1.1.70.000085
ORF1ab/nsp3994A994AgcTgcA88191B.1.1.70.000079
ORF1ab/nsp3994A994AgcTgcG8191B.1.1.70.000007
ORF1ab/nsp3994A994AgcTgcC4647B.10.000421
ORF1ab/nsp3994A994AgcTgcA147B.10.000009
ORF1ab/nsp3994A994AgcTgcC3343AY.40.000051
ORF1ab/nsp3994A994AgcTgcG843AY.40.000012
ORF1ab/nsp3994A994AgcTgcA243AY.40.000003
ORF1ab/nsp3994A994AgcTgcG2432B.1.617.20.00009
ORF1ab/nsp3994A994AgcTgcC732B.1.617.20.000026
ORF1ab/nsp3994A994AgcTgcA132B.1.617.20.000004
ORF1ab/nsp3994A994AgcTgcC2323B.1.6190.020035
ORF1ab/nsp3994A994AgcTgcC1314B.1.1770.000171
ORF1ab/nsp3994A994AgcTgcG114B.1.1770.000013
ORF1ab/nsp3994A994AgcTgcC1313AY.250.000078
ORF1ab/nsp3994A994AgcTgcC1313AY.30.000129
ORF1ab/nsp3994A994AgcTgcC1012AY.440.000061
ORF1ab/nsp3994A994AgcTgcG212AY.440.000012
ORF1ab/nsp3994A994AgcTgcC59AY.430.000022
ORF1ab/nsp3994A994AgcTgcA39AY.430.000013
ORF1ab/nsp3994A994AgcTgcG19AY.430.000004
ORF1ab/nsp3994A994AgcTgcC67AY.1030.000037
ORF1ab/nsp3994A994AgcTgcA17AY.1030.000006
ORF1ab/nsp3994A994AgcTgcC67AY.330.000401
ORF1ab/nsp3994A994AgcTgcG17AY.330.000067
ORF1ab/nsp3994A994AgcTgcG47B.1.20.000035
ORF1ab/nsp3994A994AgcTgcC37B.1.20.000026
ORF1ab/nsp3994A994AgcTgcC77B.1.5170.002989
ORF1ab/nsp3994A994AgcTgcG56AY.1020.000133
ORF1ab/nsp3994A994AgcTgcC16AY.1020.000027
ORF1ab/nsp3994A994AgcTgcC66AY.520.004886
ORF1ab/nsp3994A994AgcTgcG66AY.650.003198
ORF1ab/nsp3994A994AgcTgcC44AY.690.000747
ORF1ab/nsp3994A994AgcTgcC44B.1.160.260.009685
ORF1ab/nsp3994A994AgcTgcC44B.1.1950.020101
ORF1ab/nsp3994A994AgcTgcA34B.1.4290.000071
ORF1ab/nsp3994A994AgcTgcC14B.1.4290.000024
ORF1ab/nsp3994A994AgcTgcG44B.1.6210.000354
ORF1ab/nsp3994A994AgcTgcC44B.1.6230.002146
ORF1ab/nsp3994A994AgcTgcC23B.1.2210.000142
ORF1ab/nsp3994A994AgcTgcG13B.1.2210.000071
ORF1ab/nsp3994A994AgcTgcC23P.10.000032
ORF1ab/nsp3994A994AgcTgcG13P.10.000016
ORF1ab/nsp3994A994AgcTgcC22AY.1170.000169
ORF1ab/nsp3994A994AgcTgcC22AY.260.000057
ORF1ab/nsp3994A994AgcTgcC12AY.270.000065
ORF1ab/nsp3994A994AgcTgcA12AY.270.000065
ORF1ab/nsp3994A994AgcTgcC22AY.39.10.000079
ORF1ab/nsp3994A994AgcTgcG12AY.460.000104
ORF1ab/nsp3994A994AgcTgcA12AY.460.000104
ORF1ab/nsp3994A994AgcTgcA12AY.610.000105
ORF1ab/nsp3994A994AgcTgcG12AY.610.000105
ORF1ab/nsp3994A994AgcTgcC12B.1.10.000018
ORF1ab/nsp3994A994AgcTgcA12B.1.10.000018
ORF1ab/nsp3994A994AgcTgcC22B.1.177.810.000379
ORF1ab/nsp3994A994AgcTgcC22B.1.2580.000133
ORF1ab/nsp3994A994AgcTgcC22B.1.258.170.000208
ORF1ab/nsp3994A994AgcTgcA22B.1.466.20.000782
ORF1ab/nsp3994A994AgcTgcC22Q.80.00033
ORF1ab/nsp3994A994AgcTgcA11A0.000387
ORF1ab/nsp3994A994AgcTgcG11AY.1080.001103
ORF1ab/nsp3994A994AgcTgcC11AY.1180.000063
ORF1ab/nsp3994A994AgcTgcA11AY.1190.000035
ORF1ab/nsp3994A994AgcTgcG11AY.1200.000037
ORF1ab/nsp3994A994AgcTgcG11AY.16.10.00047
ORF1ab/nsp3994A994AgcTgcG11AY.200.000039
ORF1ab/nsp3994A994AgcTgcC11AY.230.00007
ORF1ab/nsp3994A994AgcTgcG11AY.34.10.00051
ORF1ab/nsp3994A994AgcTgcG11AY.350.000233
ORF1ab/nsp3994A994AgcTgcC11AY.390.000025
ORF1ab/nsp3994A994AgcTgcC11AY.420.00004
ORF1ab/nsp3994A994AgcTgcG11AY.450.000122
ORF1ab/nsp3994A994AgcTgcG11AY.5.30.000337
ORF1ab/nsp3994A994AgcTgcC11AY.5.40.000277
ORF1ab/nsp3994A994AgcTgcC11AY.590.00053
ORF1ab/nsp3994A994AgcTgcG11AY.70.000196
ORF1ab/nsp3994A994AgcTgcC11AY.780.001541
ORF1ab/nsp3994A994AgcTgcC11AY.850.000427
ORF1ab/nsp3994A994AgcTgcC11AY.970.001701
ORF1ab/nsp3994A994AgcTgcC11AY.980.000079
ORF1ab/nsp3994A994AgcTgcC11B0.000128
ORF1ab/nsp3994A994AgcTgcC11B.1.1.1530.001095
ORF1ab/nsp3994A994AgcTgcG11B.1.1.2220.000204
ORF1ab/nsp3994A994AgcTgcG11B.1.1.3340.016393
ORF1ab/nsp3994A994AgcTgcC11B.1.1.4640.001473
ORF1ab/nsp3994A994AgcTgcG11B.1.1.5260.003546
ORF1ab/nsp3994A994AgcTgcC11B.1.1600.000031
ORF1ab/nsp3994A994AgcTgcG11B.1.3200.001245
ORF1ab/nsp3994A994AgcTgcG11B.1.3510.00003
ORF1ab/nsp3994A994AgcTgcC11B.1.5960.000087
ORF1ab/nsp3994A994AgcTgcC11B.1.617.10.000129
ORF1ab/nsp3994A994AgcTgcA11C.350.000774
ORF1ab/nsp3994A994AgcTgcC11C.370.000116
ORF1ab/nsp3994A994AgcTgcA11L.30.003546
ORF1ab/nsp3994A994AgcTgcC11Q.10.000126