CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A890T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3890A890TA1708TnonsynGctAct99980.9898995387-5389
ORF1ab/nsp3890A890TA1708TnonsynGcTAcA9910.0101015387-5389

Details of the mutation A890T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3890A890TGctAct9899All0.000019
ORF1ab/nsp3890A890TGcTAcA199All0
ORF1ab/nsp3890A890TGctAct2222B.1.20.000194
ORF1ab/nsp3890A890TGctAct1717AY.440.000103
ORF1ab/nsp3890A890TGctAct1010AY.1030.000062
ORF1ab/nsp3890A890TGctAct77B.1.617.20.000026
ORF1ab/nsp3890A890TGctAct66AY.40.000009
ORF1ab/nsp3890A890TGctAct55AY.1020.000133
ORF1ab/nsp3890A890TGctAct44AY.250.000024
ORF1ab/nsp3890A890TGctAct44B.1.160.310.032258
ORF1ab/nsp3890A890TGctAct33AY.390.000074
ORF1ab/nsp3890A890TGctAct33P.10.000047
ORF1ab/nsp3890A890TGctAct22P.20.000373
ORF1ab/nsp3890A890TGctAct11AY.1000.000046
ORF1ab/nsp3890A890TGctAct11AY.1190.000035
ORF1ab/nsp3890A890TGctAct11AY.30.00001
ORF1ab/nsp3890A890TGctAct11AY.4.20.000022
ORF1ab/nsp3890A890TGctAct11AY.430.000004
ORF1ab/nsp3890A890TGctAct11AY.60.000041
ORF1ab/nsp3890A890TGctAct11AY.820.001357
ORF1ab/nsp3890A890TGctAct11B.10.000009
ORF1ab/nsp3890A890TGcTAcA11B.1.1.5190.00004
ORF1ab/nsp3890A890TGctAct11B.1.1600.000031
ORF1ab/nsp3890A890TGctAct11B.1.1770.000013
ORF1ab/nsp3890A890TGctAct11B.1.2210.000071
ORF1ab/nsp3890A890TGctAct11B.1.36.180.00042
ORF1ab/nsp3890A890TGctAct11B.1.5250.000113
ORF1ab/nsp3890A890TGctAct11B.1.5260.000024
ORF1ab/nsp3890A890TGctAct11D.20.000075