CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 85 | A85V | A903V | nonsyn | gCt | gTt | 14337 | 14317 | 0.998605 | 2972-2974 |
ORF1ab/nsp3 | 85 | A85V | A903V | nonsyn | gCT | gTC | 14337 | 19 | 0.00132524 | 2972-2974 |
ORF1ab/nsp3 | 85 | A85V | A903V | nonsyn | gCT | gTG | 14337 | 1 | 0.0000697496 | 2972-2974 |
Details of the mutation A85V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 14317 | 14337 | All | 0.002738 |
ORF1ab/nsp3 | 85 | A85V | gCT | gTC | 19 | 14337 | All | 0.000004 |
ORF1ab/nsp3 | 85 | A85V | gCT | gTG | 1 | 14337 | All | 0 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1714 | 1714 | B.1.1.63 | 0.661265 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1376 | 1376 | B.1.429 | 0.032376 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1302 | 1303 | AY.26 | 0.03686 |
ORF1ab/nsp3 | 85 | A85V | gCT | gTG | 1 | 1303 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1259 | 1259 | B.1.1.7 | 0.001127 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1179 | 1179 | B.1.617.2 | 0.004439 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 908 | 908 | AY.4 | 0.001413 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 732 | 732 | W.4 | 0.989189 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 566 | 566 | B.1 | 0.005184 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 411 | 412 | B.1.177.53 | 0.983254 |
ORF1ab/nsp3 | 85 | A85V | gCT | gTC | 1 | 412 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 408 | 408 | AY.44 | 0.002483 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 363 | 363 | AY.119 | 0.012817 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 310 | 310 | AY.75.1 | 0.055896 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 308 | 308 | AY.43 | 0.001365 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 257 | 257 | AY.25 | 0.001546 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 206 | 206 | W.2 | 0.995169 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 188 | 188 | W.3 | 0.989474 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 161 | 161 | AY.33 | 0.010751 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 156 | 156 | B.1.177 | 0.002054 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 152 | 152 | B.1.2 | 0.001338 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 137 | 137 | B.1.1 | 0.002485 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 129 | 129 | AY.29 | 0.002035 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 105 | 105 | W.1 | 0.913043 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 94 | 94 | P.1 | 0.001481 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 93 | 93 | B.1.621 | 0.008232 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 92 | 92 | AY.102 | 0.002439 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 90 | 90 | AY.46.5 | 0.017857 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 89 | 89 | AY.39 | 0.002199 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 80 | 80 | AY.3 | 0.000796 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 56 | 56 | B.1.525 | 0.006337 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 51 | 51 | AY.103 | 0.000317 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 51 | 51 | B.1.36 | 0.007441 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 43 | 43 | AY.46 | 0.004475 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 40 | 40 | R.1 | 0.0036 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 20 | 38 | AY.20 | 0.000777 |
ORF1ab/nsp3 | 85 | A85V | gCT | gTC | 18 | 38 | AY.20 | 0.0007 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 37 | 37 | AZ.1 | 0.03209 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 35 | 35 | AY.5 | 0.000723 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 34 | 34 | AY.4.5 | 0.003655 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 30 | 30 | P.2 | 0.005599 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 23 | 23 | B.1.258 | 0.001531 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 22 | 22 | AY.99.2 | 0.002027 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 21 | 21 | AY.47 | 0.000653 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 21 | 21 | B.1.351 | 0.000624 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 20 | 20 | C.37 | 0.002321 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 18 | 18 | AY.120 | 0.000669 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 18 | 18 | B.1.1.519 | 0.000715 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 17 | 17 | B.1.177.17 | 0.013957 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 15 | 15 | AY.14 | 0.00132 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 15 | 15 | AY.4.2 | 0.000325 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 15 | 15 | P.1.14 | 0.000717 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 14 | 14 | B.1.214.2 | 0.008393 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 14 | 14 | B.1.349 | 0.010007 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 14 | 14 | B.1.526 | 0.000329 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 13 | 13 | AY.42 | 0.000523 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 13 | 13 | C.16 | 0.013786 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 12 | 12 | AY.109 | 0.008876 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 12 | 12 | AY.98.1 | 0.000581 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 12 | 12 | B.1.362 | 0.01849 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 11 | 11 | AY.118 | 0.000689 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 11 | 11 | AY.45 | 0.001339 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 11 | 11 | AY.98 | 0.000869 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 11 | 11 | B.1.1.434 | 0.003834 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 10 | 10 | B.1.177.12 | 0.001517 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 10 | 10 | B.1.517 | 0.00427 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 9 | 9 | AY.117 | 0.000761 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 9 | 9 | B.1.637 | 0.000658 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 8 | 8 | AY.13 | 0.001288 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 8 | 8 | P.1.1 | 0.002541 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | AY.113 | 0.000997 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | AY.64 | 0.004167 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | AY.90 | 0.004791 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | B.1.1.486 | 0.011041 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | B.1.160.9 | 0.05036 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | B.1.311 | 0.001922 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | B.1.36.18 | 0.002941 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | AD.2 | 0.001314 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | AY.62 | 0.002614 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | B.1.1.189 | 0.009077 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | B.1.1.354 | 0.026316 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | B.1.177.21 | 0.000459 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | B.1.36.21 | 0.012959 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | B.1.36.8 | 0.006 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | B.1.495 | 0.054545 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | B.1.565 | 0.004862 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 5 | 5 | B.1.1.232 | 0.009074 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 5 | 5 | B.1.1.432 | 0.006329 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 5 | 5 | B.1.511 | 0.172414 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 5 | 5 | B.1.523 | 0.012255 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 5 | 5 | B.6.6 | 0.004444 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | AA.3 | 0.108108 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | B.1.1.398 | 0.012903 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | B.1.239 | 0.004884 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | B.1.351.5 | 0.002398 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | AE.8 | 0.001467 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | AY.46.3 | 0.002801 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | AY.86 | 0.00249 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.1.389 | 0.018182 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.1.56 | 0.053571 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.177.45 | 0.001144 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.544 | 0.018072 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | B.1.625 | 0.007059 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | C.18 | 0.007772 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | C.6 | 0.111111 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.1.229 | 0.011494 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.146 | 0.008475 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.160.7 | 0.004158 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.218 | 0.010309 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.229 | 0.019417 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.566 | 0.038462 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.17 | 0.016667 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.500 | 0.02 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.14 | 0.006098 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.429.1 | 0.012048 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.555 | 0.022222 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp3 | 85 | A85V | gCt | gTt | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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