CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A667A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3667A667AA1485AsyngcGgcT483137480.7758234718-4720
ORF1ab/nsp3667A667AA1485AsyngcGgcA483110550.2183814718-4720
ORF1ab/nsp3667A667AA1485AsyngcGgcC4831280.00579594718-4720

Details of the mutation A667A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3667A667AgcGgcT37484831All0.000717
ORF1ab/nsp3667A667AgcGgcA10554831All0.000202
ORF1ab/nsp3667A667AgcGgcC284831All0.000005
ORF1ab/nsp3667A667AgcGgcT553612B.1.1.70.000495
ORF1ab/nsp3667A667AgcGgcA53612B.1.1.70.000047
ORF1ab/nsp3667A667AgcGgcC6612B.1.1.70.000005
ORF1ab/nsp3667A667AgcGgcA444608AY.40.000691
ORF1ab/nsp3667A667AgcGgcT164608AY.40.000255
ORF1ab/nsp3667A667AgcGgcT339339AY.1140.078345
ORF1ab/nsp3667A667AgcGgcT290337B.1.617.20.001092
ORF1ab/nsp3667A667AgcGgcA44337B.1.617.20.000166
ORF1ab/nsp3667A667AgcGgcC3337B.1.617.20.000011
ORF1ab/nsp3667A667AgcGgcT179197AY.1030.001111
ORF1ab/nsp3667A667AgcGgcA16197AY.1030.000099
ORF1ab/nsp3667A667AgcGgcC2197AY.1030.000012
ORF1ab/nsp3667A667AgcGgcT173173B.1.177.400.891753
ORF1ab/nsp3667A667AgcGgcA76141AY.250.000457
ORF1ab/nsp3667A667AgcGgcT65141AY.250.000391
ORF1ab/nsp3667A667AgcGgcT141141B.1.3710.158249
ORF1ab/nsp3667A667AgcGgcT96132AY.430.000425
ORF1ab/nsp3667A667AgcGgcA36132AY.430.000159
ORF1ab/nsp3667A667AgcGgcT125131B.1.1600.003898
ORF1ab/nsp3667A667AgcGgcA6131B.1.1600.000187
ORF1ab/nsp3667A667AgcGgcT124124AY.46.60.008954
ORF1ab/nsp3667A667AgcGgcT98118AY.440.000597
ORF1ab/nsp3667A667AgcGgcA19118AY.440.000116
ORF1ab/nsp3667A667AgcGgcC1118AY.440.000006
ORF1ab/nsp3667A667AgcGgcA59107B.1.20.00052
ORF1ab/nsp3667A667AgcGgcT48107B.1.20.000423
ORF1ab/nsp3667A667AgcGgcT95104AY.1020.002519
ORF1ab/nsp3667A667AgcGgcC6104AY.1020.000159
ORF1ab/nsp3667A667AgcGgcA3104AY.1020.00008
ORF1ab/nsp3667A667AgcGgcT7397AY.30.000726
ORF1ab/nsp3667A667AgcGgcA2497AY.30.000239
ORF1ab/nsp3667A667AgcGgcT8292AY.4.50.008814
ORF1ab/nsp3667A667AgcGgcA1092AY.4.50.001075
ORF1ab/nsp3667A667AgcGgcT7481AY.200.002876
ORF1ab/nsp3667A667AgcGgcA781AY.200.000272
ORF1ab/nsp3667A667AgcGgcT3552B.10.000321
ORF1ab/nsp3667A667AgcGgcA1752B.10.000156
ORF1ab/nsp3667A667AgcGgcT4749P.10.00074
ORF1ab/nsp3667A667AgcGgcA249P.10.000032
ORF1ab/nsp3667A667AgcGgcT4041AY.99.20.003686
ORF1ab/nsp3667A667AgcGgcA141AY.99.20.000092
ORF1ab/nsp3667A667AgcGgcT3939AY.90.002636
ORF1ab/nsp3667A667AgcGgcT3838B.1.4080.140221
ORF1ab/nsp3667A667AgcGgcT3636B.1.617.10.004643
ORF1ab/nsp3667A667AgcGgcT3535C.360.031876
ORF1ab/nsp3667A667AgcGgcT2634AY.330.001736
ORF1ab/nsp3667A667AgcGgcA834AY.330.000534
ORF1ab/nsp3667A667AgcGgcT3131AY.1070.014445
ORF1ab/nsp3667A667AgcGgcT2131AY.390.000519
ORF1ab/nsp3667A667AgcGgcA1031AY.390.000247
ORF1ab/nsp3667A667AgcGgcT3030B.1.1.2840.003222
ORF1ab/nsp3667A667AgcGgcT2327B.1.10.000417
ORF1ab/nsp3667A667AgcGgcA227B.1.10.000036
ORF1ab/nsp3667A667AgcGgcC227B.1.10.000036
ORF1ab/nsp3667A667AgcGgcT2627B.1.4290.000612
ORF1ab/nsp3667A667AgcGgcA127B.1.4290.000024
ORF1ab/nsp3667A667AgcGgcT2525B.1.1.3280.423729
ORF1ab/nsp3667A667AgcGgcT1523AY.470.000467
ORF1ab/nsp3667A667AgcGgcA823AY.470.000249
ORF1ab/nsp3667A667AgcGgcT2021B.1.1770.000263
ORF1ab/nsp3667A667AgcGgcA121B.1.1770.000013
ORF1ab/nsp3667A667AgcGgcT1620AY.230.001116
ORF1ab/nsp3667A667AgcGgcA420AY.230.000279
ORF1ab/nsp3667A667AgcGgcT2020B.1.438.10.002145
ORF1ab/nsp3667A667AgcGgcA1919AY.950.01446
ORF1ab/nsp3667A667AgcGgcT1919C.36.30.010777
ORF1ab/nsp3667A667AgcGgcT1818AY.420.000724
ORF1ab/nsp3667A667AgcGgcA1618B.1.1.280.00498
ORF1ab/nsp3667A667AgcGgcT218B.1.1.280.000622
ORF1ab/nsp3667A667AgcGgcA1818B.1.4700.025281
ORF1ab/nsp3667A667AgcGgcA1717B.1.1.1710.0625
ORF1ab/nsp3667A667AgcGgcT1616AY.1190.000565
ORF1ab/nsp3667A667AgcGgcT1616B.30.013289
ORF1ab/nsp3667A667AgcGgcA1015AY.610.001048
ORF1ab/nsp3667A667AgcGgcT515AY.610.000524
ORF1ab/nsp3667A667AgcGgcT1414AY.116.10.00436
ORF1ab/nsp3667A667AgcGgcT1314AY.1180.000814
ORF1ab/nsp3667A667AgcGgcA114AY.1180.000063
ORF1ab/nsp3667A667AgcGgcT1014AY.260.000283
ORF1ab/nsp3667A667AgcGgcA414AY.260.000113
ORF1ab/nsp3667A667AgcGgcT1314AY.290.000205
ORF1ab/nsp3667A667AgcGgcA114AY.290.000016
ORF1ab/nsp3667A667AgcGgcT714AY.50.000145
ORF1ab/nsp3667A667AgcGgcA714AY.50.000145
ORF1ab/nsp3667A667AgcGgcT1414B.1.4270.000707
ORF1ab/nsp3667A667AgcGgcT1313B.1.1.5190.000516
ORF1ab/nsp3667A667AgcGgcT813B.1.2580.000532
ORF1ab/nsp3667A667AgcGgcA513B.1.2580.000333
ORF1ab/nsp3667A667AgcGgcT1213B.1.3510.000357
ORF1ab/nsp3667A667AgcGgcA113B.1.3510.00003
ORF1ab/nsp3667A667AgcGgcT1112AY.1000.000506
ORF1ab/nsp3667A667AgcGgcA112AY.1000.000046
ORF1ab/nsp3667A667AgcGgcA912AY.46.40.001481
ORF1ab/nsp3667A667AgcGgcT312AY.46.40.000494
ORF1ab/nsp3667A667AgcGgcT1112B.1.360.001605
ORF1ab/nsp3667A667AgcGgcA112B.1.360.000146
ORF1ab/nsp3667A667AgcGgcT912B.1.5260.000212
ORF1ab/nsp3667A667AgcGgcA312B.1.5260.000071
ORF1ab/nsp3667A667AgcGgcT711AY.98.10.000339
ORF1ab/nsp3667A667AgcGgcA411AY.98.10.000194
ORF1ab/nsp3667A667AgcGgcT1111B.1.2340.001451
ORF1ab/nsp3667A667AgcGgcT1010AY.960.020747
ORF1ab/nsp3667A667AgcGgcA68A0.002322
ORF1ab/nsp3667A667AgcGgcT28A0.000774
ORF1ab/nsp3667A667AgcGgcA58B.1.1.2140.000277
ORF1ab/nsp3667A667AgcGgcT38B.1.1.2140.000166
ORF1ab/nsp3667A667AgcGgcT77A.270.011589
ORF1ab/nsp3667A667AgcGgcT77AY.340.000679
ORF1ab/nsp3667A667AgcGgcT47B.1.2430.000278
ORF1ab/nsp3667A667AgcGgcA37B.1.2430.000209
ORF1ab/nsp3667A667AgcGgcT46AY.9.20.000147
ORF1ab/nsp3667A667AgcGgcA26AY.9.20.000073
ORF1ab/nsp3667A667AgcGgcT56B.1.1.370.000964
ORF1ab/nsp3667A667AgcGgcA16B.1.1.370.000193
ORF1ab/nsp3667A667AgcGgcT66B.1.6210.000531
ORF1ab/nsp3667A667AgcGgcT55AE.80.002445
ORF1ab/nsp3667A667AgcGgcT55AY.3.10.000426
ORF1ab/nsp3667A667AgcGgcT45AY.39.10.000158
ORF1ab/nsp3667A667AgcGgcA15AY.39.10.00004
ORF1ab/nsp3667A667AgcGgcT45B0.000511
ORF1ab/nsp3667A667AgcGgcC15B0.000128
ORF1ab/nsp3667A667AgcGgcT55B.1.1.4160.004525
ORF1ab/nsp3667A667AgcGgcA55B.1.221.20.02008
ORF1ab/nsp3667A667AgcGgcA35B.1.3110.000824
ORF1ab/nsp3667A667AgcGgcT25B.1.3110.000549
ORF1ab/nsp3667A667AgcGgcA55B.1.3240.008026
ORF1ab/nsp3667A667AgcGgcT44AY.4.20.000087
ORF1ab/nsp3667A667AgcGgcT34AY.460.000312
ORF1ab/nsp3667A667AgcGgcA14AY.460.000104
ORF1ab/nsp3667A667AgcGgcT44AY.46.20.002541
ORF1ab/nsp3667A667AgcGgcT44AY.540.000381
ORF1ab/nsp3667A667AgcGgcT34AY.680.000821
ORF1ab/nsp3667A667AgcGgcA14AY.680.000274
ORF1ab/nsp3667A667AgcGgcA44AY.840.00175
ORF1ab/nsp3667A667AgcGgcT44AY.980.000316
ORF1ab/nsp3667A667AgcGgcT24B.1.1.3260.003521
ORF1ab/nsp3667A667AgcGgcC24B.1.1.3260.003521
ORF1ab/nsp3667A667AgcGgcT44B.1.1.4200.004024
ORF1ab/nsp3667A667AgcGgcT34B.1.1.500.002037
ORF1ab/nsp3667A667AgcGgcA14B.1.1.500.000679
ORF1ab/nsp3667A667AgcGgcA44B.1.1.630.001543
ORF1ab/nsp3667A667AgcGgcT44B.1.177.820.001909
ORF1ab/nsp3667A667AgcGgcT44B.1.1950.020101
ORF1ab/nsp3667A667AgcGgcT44B.1.2400.000862
ORF1ab/nsp3667A667AgcGgcT44B.1.5740.008602
ORF1ab/nsp3667A667AgcGgcT44B.1.6280.001409
ORF1ab/nsp3667A667AgcGgcT44P.20.000747
ORF1ab/nsp3667A667AgcGgcA33A.2.50.001497
ORF1ab/nsp3667A667AgcGgcA33AY.1050.001929
ORF1ab/nsp3667A667AgcGgcA33AY.1200.000112
ORF1ab/nsp3667A667AgcGgcT33AY.450.000365
ORF1ab/nsp3667A667AgcGgcA23AY.550.001835
ORF1ab/nsp3667A667AgcGgcT13AY.550.000917
ORF1ab/nsp3667A667AgcGgcT33AY.700.000626
ORF1ab/nsp3667A667AgcGgcT33B.1.1.1980.004405
ORF1ab/nsp3667A667AgcGgcT33B.1.1.5250.016393
ORF1ab/nsp3667A667AgcGgcT33B.1.1110.003525
ORF1ab/nsp3667A667AgcGgcT33B.1.264.10.142857
ORF1ab/nsp3667A667AgcGgcT33B.1.5880.00273
ORF1ab/nsp3667A667AgcGgcT33B.1.6270.006061
ORF1ab/nsp3667A667AgcGgcT33B.1.6370.000219
ORF1ab/nsp3667A667AgcGgcT23P.1.140.000096
ORF1ab/nsp3667A667AgcGgcA13P.1.140.000048
ORF1ab/nsp3667A667AgcGgcA220.111111
ORF1ab/nsp3667A667AgcGgcT22AY.100.00106
ORF1ab/nsp3667A667AgcGgcT22AY.1170.000169
ORF1ab/nsp3667A667AgcGgcT22AY.120.10.000642
ORF1ab/nsp3667A667AgcGgcT22AY.120.2.10.000997
ORF1ab/nsp3667A667AgcGgcT22AY.130.000322
ORF1ab/nsp3667A667AgcGgcT22AY.140.000176
ORF1ab/nsp3667A667AgcGgcT22AY.270.000129
ORF1ab/nsp3667A667AgcGgcA12AY.34.10.00051
ORF1ab/nsp3667A667AgcGgcT12AY.34.10.00051
ORF1ab/nsp3667A667AgcGgcA12AY.360.000148
ORF1ab/nsp3667A667AgcGgcT12AY.360.000148
ORF1ab/nsp3667A667AgcGgcT22AY.4.10.001475
ORF1ab/nsp3667A667AgcGgcA12AY.5.30.000337
ORF1ab/nsp3667A667AgcGgcT12AY.5.30.000337
ORF1ab/nsp3667A667AgcGgcT12AY.650.000533
ORF1ab/nsp3667A667AgcGgcA12AY.650.000533
ORF1ab/nsp3667A667AgcGgcT22AY.690.000373
ORF1ab/nsp3667A667AgcGgcT22AY.770.002255
ORF1ab/nsp3667A667AgcGgcA22AY.790.002421
ORF1ab/nsp3667A667AgcGgcT12AY.850.000427
ORF1ab/nsp3667A667AgcGgcA12AY.850.000427
ORF1ab/nsp3667A667AgcGgcT22AY.940.000885
ORF1ab/nsp3667A667AgcGgcT22B.1.1.2220.000408
ORF1ab/nsp3667A667AgcGgcT22B.1.1.250.001137
ORF1ab/nsp3667A667AgcGgcT12B.1.1.2770.000759
ORF1ab/nsp3667A667AgcGgcA12B.1.1.2770.000759
ORF1ab/nsp3667A667AgcGgcT12B.1.1.3060.000438
ORF1ab/nsp3667A667AgcGgcC12B.1.1.3060.000438
ORF1ab/nsp3667A667AgcGgcA22B.1.160.280.005848
ORF1ab/nsp3667A667AgcGgcT22B.1.160.290.008439
ORF1ab/nsp3667A667AgcGgcT22B.1.177.810.000379
ORF1ab/nsp3667A667AgcGgcT22B.1.2210.000142
ORF1ab/nsp3667A667AgcGgcT22B.1.258.170.000208
ORF1ab/nsp3667A667AgcGgcT22B.1.258.30.00335
ORF1ab/nsp3667A667AgcGgcT22B.1.36.290.001035
ORF1ab/nsp3667A667AgcGgcT22B.1.4970.00063
ORF1ab/nsp3667A667AgcGgcT22B.1.5580.009132
ORF1ab/nsp3667A667AgcGgcA22B.1.5610.000794
ORF1ab/nsp3667A667AgcGgcT22B.1.5700.005882
ORF1ab/nsp3667A667AgcGgcT22B.550.0059
ORF1ab/nsp3667A667AgcGgcT22D.20.00015
ORF1ab/nsp3667A667AgcGgcC22P.1.170.000324
ORF1ab/nsp3667A667AgcGgcT11A.290.005319
ORF1ab/nsp3667A667AgcGgcT11AD.20.000219
ORF1ab/nsp3667A667AgcGgcT11AY.1080.001103
ORF1ab/nsp3667A667AgcGgcT11AY.110.001339
ORF1ab/nsp3667A667AgcGgcT11AY.1130.000142
ORF1ab/nsp3667A667AgcGgcT11AY.1160.000287
ORF1ab/nsp3667A667AgcGgcT11AY.1210.000135
ORF1ab/nsp3667A667AgcGgcT11AY.160.00038
ORF1ab/nsp3667A667AgcGgcT11AY.210.001898
ORF1ab/nsp3667A667AgcGgcT11AY.320.000532
ORF1ab/nsp3667A667AgcGgcT11AY.380.000499
ORF1ab/nsp3667A667AgcGgcA11AY.4.30.000842
ORF1ab/nsp3667A667AgcGgcT11AY.4.40.000409
ORF1ab/nsp3667A667AgcGgcT11AY.400.000964
ORF1ab/nsp3667A667AgcGgcA11AY.510.000909
ORF1ab/nsp3667A667AgcGgcA11AY.530.000288
ORF1ab/nsp3667A667AgcGgcT11AY.580.000907
ORF1ab/nsp3667A667AgcGgcT11AY.730.000665
ORF1ab/nsp3667A667AgcGgcT11AY.740.000116
ORF1ab/nsp3667A667AgcGgcT11AY.750.000056
ORF1ab/nsp3667A667AgcGgcT11AY.810.001992
ORF1ab/nsp3667A667AgcGgcT11AY.9.10.000084
ORF1ab/nsp3667A667AgcGgcT11AY.920.000287
ORF1ab/nsp3667A667AgcGgcT11AZ.20.000821
ORF1ab/nsp3667A667AgcGgcT11B.1.1.10.000327
ORF1ab/nsp3667A667AgcGgcT11B.1.1.2160.00089
ORF1ab/nsp3667A667AgcGgcA11B.1.1.2530.002506
ORF1ab/nsp3667A667AgcGgcT11B.1.1.2940.001266
ORF1ab/nsp3667A667AgcGgcT11B.1.1.330.000421
ORF1ab/nsp3667A667AgcGgcA11B.1.1.3330.001076
ORF1ab/nsp3667A667AgcGgcT11B.1.1.3690.000446
ORF1ab/nsp3667A667AgcGgcT11B.1.1.3890.006061
ORF1ab/nsp3667A667AgcGgcT11B.1.1.4090.002833
ORF1ab/nsp3667A667AgcGgcT11B.1.1.4170.002703
ORF1ab/nsp3667A667AgcGgcC11B.1.1.4650.015625
ORF1ab/nsp3667A667AgcGgcT11B.1.110.30.000718
ORF1ab/nsp3667A667AgcGgcT11B.1.1260.001276
ORF1ab/nsp3667A667AgcGgcA11B.1.177.190.001431
ORF1ab/nsp3667A667AgcGgcA11B.1.177.210.000076
ORF1ab/nsp3667A667AgcGgcT11B.1.177.320.00135
ORF1ab/nsp3667A667AgcGgcT11B.1.177.40.000211
ORF1ab/nsp3667A667AgcGgcT11B.1.177.430.001477
ORF1ab/nsp3667A667AgcGgcT11B.1.177.50.001242
ORF1ab/nsp3667A667AgcGgcT11B.1.177.770.000726
ORF1ab/nsp3667A667AgcGgcT11B.1.2060.000816
ORF1ab/nsp3667A667AgcGgcT11B.1.2140.003663
ORF1ab/nsp3667A667AgcGgcT11B.1.214.10.02
ORF1ab/nsp3667A667AgcGgcT11B.1.214.20.0006
ORF1ab/nsp3667A667AgcGgcT11B.1.220.001318
ORF1ab/nsp3667A667AgcGgcA11B.1.2410.000812
ORF1ab/nsp3667A667AgcGgcA11B.1.258.210.007752
ORF1ab/nsp3667A667AgcGgcT11B.1.2640.012346
ORF1ab/nsp3667A667AgcGgcT11B.1.3190.003049
ORF1ab/nsp3667A667AgcGgcC11B.1.36.10.00114
ORF1ab/nsp3667A667AgcGgcT11B.1.36.160.001425
ORF1ab/nsp3667A667AgcGgcA11B.1.36.170.000494
ORF1ab/nsp3667A667AgcGgcT11B.1.36.180.00042
ORF1ab/nsp3667A667AgcGgcT11B.1.3690.000285
ORF1ab/nsp3667A667AgcGgcA11B.1.4260.001009
ORF1ab/nsp3667A667AgcGgcA11B.1.428.20.033333
ORF1ab/nsp3667A667AgcGgcT11B.1.466.10.007194
ORF1ab/nsp3667A667AgcGgcA11B.1.466.20.000391
ORF1ab/nsp3667A667AgcGgcT11B.1.4680.005714
ORF1ab/nsp3667A667AgcGgcT11B.1.4710.002732
ORF1ab/nsp3667A667AgcGgcT11B.1.5170.000427
ORF1ab/nsp3667A667AgcGgcA11B.1.5180.011765
ORF1ab/nsp3667A667AgcGgcT11B.1.5640.000426
ORF1ab/nsp3667A667AgcGgcT11B.1.5680.001111
ORF1ab/nsp3667A667AgcGgcA11B.1.5750.000303
ORF1ab/nsp3667A667AgcGgcA11B.1.5850.027778
ORF1ab/nsp3667A667AgcGgcT11B.1.5950.000261
ORF1ab/nsp3667A667AgcGgcT11B.1.5960.000087
ORF1ab/nsp3667A667AgcGgcA11B.1.6230.000536
ORF1ab/nsp3667A667AgcGgcT11C.10.002392
ORF1ab/nsp3667A667AgcGgcT11C.390.018868
ORF1ab/nsp3667A667AgcGgcT11P.1.10.000318
ORF1ab/nsp3667A667AgcGgcA11P.1.150.000232
ORF1ab/nsp3667A667AgcGgcT11P.1.160.000374
ORF1ab/nsp3667A667AgcGgcT11P.1.40.000977
ORF1ab/nsp3667A667AgcGgcT11P.1.70.000319
ORF1ab/nsp3667A667AgcGgcT11Q.10.000126
ORF1ab/nsp3667A667AgcGgcA11Q.80.000165