CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A645A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3645A645AA1463AsyngcTgcC5765160.8958334652-4654
ORF1ab/nsp3645A645AA1463AsyngcTgcG576360.06254652-4654
ORF1ab/nsp3645A645AA1463AsyngcTgcA576240.04166674652-4654

Details of the mutation A645A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3645A645AgcTgcC516576All0.000099
ORF1ab/nsp3645A645AgcTgcG36576All0.000007
ORF1ab/nsp3645A645AgcTgcA24576All0.000005
ORF1ab/nsp3645A645AgcTgcC195203AY.40.000304
ORF1ab/nsp3645A645AgcTgcG7203AY.40.000011
ORF1ab/nsp3645A645AgcTgcA1203AY.40.000002
ORF1ab/nsp3645A645AgcTgcC118118B.1.1.2140.006544
ORF1ab/nsp3645A645AgcTgcC4355B.1.1.70.000038
ORF1ab/nsp3645A645AgcTgcG955B.1.1.70.000008
ORF1ab/nsp3645A645AgcTgcA355B.1.1.70.000003
ORF1ab/nsp3645A645AgcTgcC5555B.1.4850.820896
ORF1ab/nsp3645A645AgcTgcC1515AY.1000.00069
ORF1ab/nsp3645A645AgcTgcC1315B.1.617.20.000049
ORF1ab/nsp3645A645AgcTgcG115B.1.617.20.000004
ORF1ab/nsp3645A645AgcTgcA115B.1.617.20.000004
ORF1ab/nsp3645A645AgcTgcC912B.1.20.000079
ORF1ab/nsp3645A645AgcTgcA212B.1.20.000018
ORF1ab/nsp3645A645AgcTgcG112B.1.20.000009
ORF1ab/nsp3645A645AgcTgcC59AY.440.00003
ORF1ab/nsp3645A645AgcTgcA49AY.440.000024
ORF1ab/nsp3645A645AgcTgcC88AY.430.000035
ORF1ab/nsp3645A645AgcTgcA77AY.4.20.000152
ORF1ab/nsp3645A645AgcTgcC66AY.250.000036
ORF1ab/nsp3645A645AgcTgcC46B.1.1770.000053
ORF1ab/nsp3645A645AgcTgcG16B.1.1770.000013
ORF1ab/nsp3645A645AgcTgcA16B.1.1770.000013
ORF1ab/nsp3645A645AgcTgcC45B.10.000037
ORF1ab/nsp3645A645AgcTgcG15B.10.000009
ORF1ab/nsp3645A645AgcTgcC35B.1.10.000054
ORF1ab/nsp3645A645AgcTgcA15B.1.10.000018
ORF1ab/nsp3645A645AgcTgcG15B.1.10.000018
ORF1ab/nsp3645A645AgcTgcC55B.1.360.00073
ORF1ab/nsp3645A645AgcTgcC230.111111
ORF1ab/nsp3645A645AgcTgcA130.055556
ORF1ab/nsp3645A645AgcTgcC33AY.1060.001005
ORF1ab/nsp3645A645AgcTgcC23AY.240.000862
ORF1ab/nsp3645A645AgcTgcG13AY.240.000431
ORF1ab/nsp3645A645AgcTgcG13AY.50.000021
ORF1ab/nsp3645A645AgcTgcC13AY.50.000021
ORF1ab/nsp3645A645AgcTgcA13AY.50.000021
ORF1ab/nsp3645A645AgcTgcG33B.1.1.2430.012245
ORF1ab/nsp3645A645AgcTgcC33B.1.5770.002062
ORF1ab/nsp3645A645AgcTgcG12AY.1020.000027
ORF1ab/nsp3645A645AgcTgcC12AY.1020.000027
ORF1ab/nsp3645A645AgcTgcG22B.1.160.160.001859
ORF1ab/nsp3645A645AgcTgcC12B.1.2210.000071
ORF1ab/nsp3645A645AgcTgcA12B.1.2210.000071
ORF1ab/nsp3645A645AgcTgcC22B.1.3510.000059
ORF1ab/nsp3645A645AgcTgcG22P.10.000032
ORF1ab/nsp3645A645AgcTgcC11A.270.001656
ORF1ab/nsp3645A645AgcTgcC11AY.1030.000006
ORF1ab/nsp3645A645AgcTgcC11AY.200.000039
ORF1ab/nsp3645A645AgcTgcG11AY.260.000028
ORF1ab/nsp3645A645AgcTgcC11AY.3.10.000085
ORF1ab/nsp3645A645AgcTgcC11AY.46.10.001027
ORF1ab/nsp3645A645AgcTgcC11AY.46.40.000165
ORF1ab/nsp3645A645AgcTgcC11AY.820.001357
ORF1ab/nsp3645A645AgcTgcA11B.1.1.5190.00004
ORF1ab/nsp3645A645AgcTgcC11B.1.1.5230.001563
ORF1ab/nsp3645A645AgcTgcC11B.1.177.180.00116
ORF1ab/nsp3645A645AgcTgcC11B.1.177.190.001431
ORF1ab/nsp3645A645AgcTgcG11B.1.177.40.000211
ORF1ab/nsp3645A645AgcTgcG11B.1.2580.000067
ORF1ab/nsp3645A645AgcTgcC11B.1.4040.001302
ORF1ab/nsp3645A645AgcTgcG11B.1.4270.00005
ORF1ab/nsp3645A645AgcTgcC11B.1.4290.000024
ORF1ab/nsp3645A645AgcTgcC11B.1.5260.000024
ORF1ab/nsp3645A645AgcTgcC11B.1.5650.00081
ORF1ab/nsp3645A645AgcTgcC11B.1.617.10.000129
ORF1ab/nsp3645A645AgcTgcC11B.200.023256
ORF1ab/nsp3645A645AgcTgcG11D.20.000075
ORF1ab/nsp3645A645AgcTgcC11P.1.140.000048
ORF1ab/nsp3645A645AgcTgcC11Q.80.000165