CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A54V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp354A54VA872VnonsyngCcgTc110110990.9981832879-2881
ORF1ab/nsp354A54VA872VnonsyngCCgTT110120.001816532879-2881

Details of the mutation A54V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp354A54VgCcgTc10991101All0.00021
ORF1ab/nsp354A54VgCCgTT21101All0
ORF1ab/nsp354A54VgCcgTc186186B.1.1.70.000167
ORF1ab/nsp354A54VgCcgTc101101AY.1030.000627
ORF1ab/nsp354A54VgCcgTc8787AY.230.006068
ORF1ab/nsp354A54VgCcgTc7272B.1.4290.001694
ORF1ab/nsp354A54VgCcgTc7070B.1.3770.319635
ORF1ab/nsp354A54VgCcgTc6767B.1.5690.971014
ORF1ab/nsp354A54VgCcgTc5050B.10.000458
ORF1ab/nsp354A54VgCcgTc5050B.1.1.2740.252525
ORF1ab/nsp354A54VgCcgTc3737AY.40.000058
ORF1ab/nsp354A54VgCcgTc3232B.1.617.20.00012
ORF1ab/nsp354A54VgCcgTc3131AY.430.000137
ORF1ab/nsp354A54VgCcgTc1818B.1.20.000158
ORF1ab/nsp354A54VgCcgTc1616AY.1020.000424
ORF1ab/nsp354A54VgCcgTc1414AQ.11
ORF1ab/nsp354A54VgCcgTc1313P.1.150.00302
ORF1ab/nsp354A54VgCcgTc1212AY.390.000297
ORF1ab/nsp354A54VgCcgTc1212AY.50.000248
ORF1ab/nsp354A54VgCcgTc1212B.1.10.000218
ORF1ab/nsp354A54VgCcgTc1212B.1.1.370.002314
ORF1ab/nsp354A54VgCcgTc1111AY.4.20.000239
ORF1ab/nsp354A54VgCcgTc1010AY.120.003161
ORF1ab/nsp354A54VgCcgTc88AY.440.000049
ORF1ab/nsp354A54VgCcgTc88AY.98.10.000387
ORF1ab/nsp354A54VgCcgTc77AY.470.000218
ORF1ab/nsp354A54VgCcgTc77AY.9.10.000586
ORF1ab/nsp354A54VgCcgTc77B.1.1.4340.00244
ORF1ab/nsp354A54VgCcgTc77B.1.1770.000092
ORF1ab/nsp354A54VgCcgTc77B.1.5960.00061
ORF1ab/nsp354A54VgCcgTc77P.10.00011
ORF1ab/nsp354A54VgCcgTc55B.1.4220.004062
ORF1ab/nsp354A54VgCCgTT240.111111
ORF1ab/nsp354A54VgCcgTc240.111111
ORF1ab/nsp354A54VgCcgTc44AY.250.000024
ORF1ab/nsp354A54VgCcgTc44AY.30.00004
ORF1ab/nsp354A54VgCcgTc44B.1.1.5190.000159
ORF1ab/nsp354A54VgCcgTc44B.1.2340.000528
ORF1ab/nsp354A54VgCcgTc33A.2.5.20.004717
ORF1ab/nsp354A54VgCcgTc33AY.750.000168
ORF1ab/nsp354A54VgCcgTc33AY.920.000862
ORF1ab/nsp354A54VgCcgTc33B.1.2430.000209
ORF1ab/nsp354A54VgCcgTc33B.1.2580.0002
ORF1ab/nsp354A54VgCcgTc33B.1.4590.012245
ORF1ab/nsp354A54VgCcgTc33B.1.5090.002597
ORF1ab/nsp354A54VgCcgTc33B.1.6390.065217
ORF1ab/nsp354A54VgCcgTc22AY.1000.000092
ORF1ab/nsp354A54VgCcgTc22AY.1160.000574
ORF1ab/nsp354A54VgCcgTc22AY.1180.000125
ORF1ab/nsp354A54VgCcgTc22AY.1190.000071
ORF1ab/nsp354A54VgCcgTc22AY.200.000078
ORF1ab/nsp354A54VgCcgTc22AY.330.000134
ORF1ab/nsp354A54VgCcgTc22AY.39.10.000079
ORF1ab/nsp354A54VgCcgTc22AY.46.40.000329
ORF1ab/nsp354A54VgCcgTc22AY.9.20.000073
ORF1ab/nsp354A54VgCcgTc22B0.000256
ORF1ab/nsp354A54VgCcgTc22B.1.1.2140.000111
ORF1ab/nsp354A54VgCcgTc22B.1.1.630.000772
ORF1ab/nsp354A54VgCcgTc22B.1.1600.000062
ORF1ab/nsp354A54VgCcgTc22B.1.214.20.001199
ORF1ab/nsp354A54VgCcgTc22B.1.2370.00995
ORF1ab/nsp354A54VgCcgTc22B.1.36.180.00084
ORF1ab/nsp354A54VgCcgTc11AY.1170.000085
ORF1ab/nsp354A54VgCcgTc11AY.1200.000037
ORF1ab/nsp354A54VgCcgTc11AY.120.2.10.000498
ORF1ab/nsp354A54VgCcgTc11AY.1210.000135
ORF1ab/nsp354A54VgCcgTc11AY.160.00038
ORF1ab/nsp354A54VgCcgTc11AY.190.00114
ORF1ab/nsp354A54VgCcgTc11AY.240.000431
ORF1ab/nsp354A54VgCcgTc11AY.360.000148
ORF1ab/nsp354A54VgCcgTc11AY.4.2.10.000149
ORF1ab/nsp354A54VgCcgTc11AY.4.40.000409
ORF1ab/nsp354A54VgCcgTc11AY.530.000288
ORF1ab/nsp354A54VgCcgTc11AY.650.000533
ORF1ab/nsp354A54VgCcgTc11AY.840.000437
ORF1ab/nsp354A54VgCcgTc11AY.90.000068
ORF1ab/nsp354A54VgCcgTc11AY.99.20.000092
ORF1ab/nsp354A54VgCcgTc11B.1.1.1760.000439
ORF1ab/nsp354A54VgCcgTc11B.1.1.1870.00885
ORF1ab/nsp354A54VgCcgTc11B.1.1.2220.000204
ORF1ab/nsp354A54VgCcgTc11B.1.1.250.000569
ORF1ab/nsp354A54VgCcgTc11B.1.1.2770.000759
ORF1ab/nsp354A54VgCcgTc11B.1.1.3880.045455
ORF1ab/nsp354A54VgCcgTc11B.1.1.5170.006803
ORF1ab/nsp354A54VgCcgTc11B.1.1.5260.003546
ORF1ab/nsp354A54VgCcgTc11B.1.177.180.00116
ORF1ab/nsp354A54VgCcgTc11B.1.177.40.000211
ORF1ab/nsp354A54VgCcgTc11B.1.177.70.000165
ORF1ab/nsp354A54VgCcgTc11B.1.2210.000071
ORF1ab/nsp354A54VgCcgTc11B.1.258.210.007752
ORF1ab/nsp354A54VgCcgTc11B.1.30.002618
ORF1ab/nsp354A54VgCcgTc11B.1.3110.000275
ORF1ab/nsp354A54VgCcgTc11B.1.3290.000608
ORF1ab/nsp354A54VgCcgTc11B.1.3320.003497
ORF1ab/nsp354A54VgCcgTc11B.1.3510.00003
ORF1ab/nsp354A54VgCcgTc11B.1.3660.004878
ORF1ab/nsp354A54VgCcgTc11B.1.3960.000706
ORF1ab/nsp354A54VgCcgTc11B.1.4410.009615
ORF1ab/nsp354A54VgCcgTc11B.1.4520.013699
ORF1ab/nsp354A54VgCcgTc11B.1.5510.00129
ORF1ab/nsp354A54VgCcgTc11B.1.5610.000397
ORF1ab/nsp354A54VgCcgTc11B.1.619.10.000641
ORF1ab/nsp354A54VgCcgTc11B.1.6210.000089
ORF1ab/nsp354A54VgCcgTc11B.1.6230.000536
ORF1ab/nsp354A54VgCcgTc11B.1.840.020833
ORF1ab/nsp354A54VgCcgTc11B.60.00091
ORF1ab/nsp354A54VgCcgTc11B.6.10.026316
ORF1ab/nsp354A54VgCcgTc11D.50.004975
ORF1ab/nsp354A54VgCcgTc11P.1.120.000484
ORF1ab/nsp354A54VgCcgTc11P.20.000187
ORF1ab/nsp354A54VgCcgTc11R.10.00009