CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A534A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3534A534AA1352AsyngcCgcT33991336000.9884974319-4321
ORF1ab/nsp3534A534AA1352AsyngcCgcA339913760.01106184319-4321
ORF1ab/nsp3534A534AA1352AsyngcCgcG33991150.0004412934319-4321

Details of the mutation A534A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3534A534AgcCgcT3360033991All0.006426
ORF1ab/nsp3534A534AgcCgcA37633991All0.000072
ORF1ab/nsp3534A534AgcCgcG1533991All0.000003
ORF1ab/nsp3534A534AgcCgcT1181211812AY.1180.740008
ORF1ab/nsp3534A534AgcCgcT1178711788AY.9.10.986855
ORF1ab/nsp3534A534AgcCgcA111788AY.9.10.000084
ORF1ab/nsp3534A534AgcCgcT34273655AY.40.005334
ORF1ab/nsp3534A534AgcCgcA2283655AY.40.000355
ORF1ab/nsp3534A534AgcCgcT13521365B.1.1.70.00121
ORF1ab/nsp3534A534AgcCgcA71365B.1.1.70.000006
ORF1ab/nsp3534A534AgcCgcG61365B.1.1.70.000005
ORF1ab/nsp3534A534AgcCgcT11541154AY.630.446422
ORF1ab/nsp3534A534AgcCgcT377377AY.480.175349
ORF1ab/nsp3534A534AgcCgcT278296B.1.617.20.001047
ORF1ab/nsp3534A534AgcCgcA17296B.1.617.20.000064
ORF1ab/nsp3534A534AgcCgcG1296B.1.617.20.000004
ORF1ab/nsp3534A534AgcCgcT291291AY.9.20.010688
ORF1ab/nsp3534A534AgcCgcT259259AY.1030.001608
ORF1ab/nsp3534A534AgcCgcT172172B.1.20.001515
ORF1ab/nsp3534A534AgcCgcT149150AY.250.000896
ORF1ab/nsp3534A534AgcCgcA1150AY.250.000006
ORF1ab/nsp3534A534AgcCgcT122126AY.430.000541
ORF1ab/nsp3534A534AgcCgcA4126AY.430.000018
ORF1ab/nsp3534A534AgcCgcT119119AY.1190.004202
ORF1ab/nsp3534A534AgcCgcT114116B.1.1770.001501
ORF1ab/nsp3534A534AgcCgcA2116B.1.1770.000026
ORF1ab/nsp3534A534AgcCgcT101101AY.440.000615
ORF1ab/nsp3534A534AgcCgcT8686B.1.1.2140.004769
ORF1ab/nsp3534A534AgcCgcT7780B.10.000705
ORF1ab/nsp3534A534AgcCgcA380B.10.000027
ORF1ab/nsp3534A534AgcCgcT7979B.1.5260.001857
ORF1ab/nsp3534A534AgcCgcT7474AY.390.001829
ORF1ab/nsp3534A534AgcCgcT7373AY.30.000726
ORF1ab/nsp3534A534AgcCgcT7272P.1.160.026936
ORF1ab/nsp3534A534AgcCgcT6262B.1.438.10.00665
ORF1ab/nsp3534A534AgcCgcT6060P.10.000945
ORF1ab/nsp3534A534AgcCgcT5959A.150.936508
ORF1ab/nsp3534A534AgcCgcT5454B.1.10.00098
ORF1ab/nsp3534A534AgcCgcT5353B.1.6370.003873
ORF1ab/nsp3534A534AgcCgcT4949B.1.2430.00341
ORF1ab/nsp3534A534AgcCgcT4445AY.1020.001167
ORF1ab/nsp3534A534AgcCgcA145AY.1020.000027
ORF1ab/nsp3534A534AgcCgcT4545B.1.2340.005937
ORF1ab/nsp3534A534AgcCgcT4242C.370.004875
ORF1ab/nsp3534A534AgcCgcT3737B.1.1470.027967
ORF1ab/nsp3534A534AgcCgcT3535B.1.243.10.777778
ORF1ab/nsp3534A534AgcCgcT3434B.1.1.10.011107
ORF1ab/nsp3534A534AgcCgcT3131A.2.5.20.048742
ORF1ab/nsp3534A534AgcCgcT3030R.10.0027
ORF1ab/nsp3534A534AgcCgcA2728AY.690.00504
ORF1ab/nsp3534A534AgcCgcT128AY.690.000187
ORF1ab/nsp3534A534AgcCgcT2328B.1.3510.000684
ORF1ab/nsp3534A534AgcCgcA528B.1.3510.000149
ORF1ab/nsp3534A534AgcCgcA2328B.1.360.003356
ORF1ab/nsp3534A534AgcCgcT528B.1.360.00073
ORF1ab/nsp3534A534AgcCgcT2727AY.260.000764
ORF1ab/nsp3534A534AgcCgcT2727B.1.258.140.026471
ORF1ab/nsp3534A534AgcCgcT2226B.1.5250.00249
ORF1ab/nsp3534A534AgcCgcG426B.1.5250.000453
ORF1ab/nsp3534A534AgcCgcT2626B.1.5420.8125
ORF1ab/nsp3534A534AgcCgcT2325AY.1000.001058
ORF1ab/nsp3534A534AgcCgcA225AY.1000.000092
ORF1ab/nsp3534A534AgcCgcT2525AY.1100.002817
ORF1ab/nsp3534A534AgcCgcT2424AY.330.001603
ORF1ab/nsp3534A534AgcCgcA2424AY.4.10.017699
ORF1ab/nsp3534A534AgcCgcT2424B.1.4290.000565
ORF1ab/nsp3534A534AgcCgcT2323AY.200.000894
ORF1ab/nsp3534A534AgcCgcT2323AY.50.000475
ORF1ab/nsp3534A534AgcCgcT2222AY.1110.004029
ORF1ab/nsp3534A534AgcCgcT1818AY.230.001255
ORF1ab/nsp3534A534AgcCgcT1818P.1.140.00086
ORF1ab/nsp3534A534AgcCgcT1717AY.340.001648
ORF1ab/nsp3534A534AgcCgcT1717AY.39.10.000673
ORF1ab/nsp3534A534AgcCgcT1616B.1.1600.000499
ORF1ab/nsp3534A534AgcCgcT1414AY.980.001106
ORF1ab/nsp3534A534AgcCgcT1414AY.99.20.00129
ORF1ab/nsp3534A534AgcCgcT1414B.1.2580.000932
ORF1ab/nsp3534A534AgcCgcA1112AT.10.05641
ORF1ab/nsp3534A534AgcCgcT112AT.10.005128
ORF1ab/nsp3534A534AgcCgcT1212P.1.40.011719
ORF1ab/nsp3534A534AgcCgcT1011AY.1170.000845
ORF1ab/nsp3534A534AgcCgcA111AY.1170.000085
ORF1ab/nsp3534A534AgcCgcT1111AY.290.000174
ORF1ab/nsp3534A534AgcCgcT1011AY.460.001041
ORF1ab/nsp3534A534AgcCgcA111AY.460.000104
ORF1ab/nsp3534A534AgcCgcT1111AY.98.10.000533
ORF1ab/nsp3534A534AgcCgcT1111B.1.1.370.002122
ORF1ab/nsp3534A534AgcCgcT1010AY.1200.000372
ORF1ab/nsp3534A534AgcCgcT1010B.1.1.2690.013532
ORF1ab/nsp3534A534AgcCgcT1010B.1.5960.000871
ORF1ab/nsp3534A534AgcCgcT710B.1.6210.00062
ORF1ab/nsp3534A534AgcCgcG210B.1.6210.000177
ORF1ab/nsp3534A534AgcCgcA110B.1.6210.000089
ORF1ab/nsp3534A534AgcCgcT99AY.420.000362
ORF1ab/nsp3534A534AgcCgcT99AY.840.003937
ORF1ab/nsp3534A534AgcCgcT99B.1.1.5190.000357
ORF1ab/nsp3534A534AgcCgcT99B.1.3690.002567
ORF1ab/nsp3534A534AgcCgcT88AY.1050.005145
ORF1ab/nsp3534A534AgcCgcT88AY.1160.002294
ORF1ab/nsp3534A534AgcCgcT88AY.1210.001083
ORF1ab/nsp3534A534AgcCgcT88AY.470.000249
ORF1ab/nsp3534A534AgcCgcT88B.1.2210.000568
ORF1ab/nsp3534A534AgcCgcT88B.1.4270.000404
ORF1ab/nsp3534A534AgcCgcT88P.1.170.001294
ORF1ab/nsp3534A534AgcCgcT77AY.4.20.000152
ORF1ab/nsp3534A534AgcCgcT67AY.650.003198
ORF1ab/nsp3534A534AgcCgcA17AY.650.000533
ORF1ab/nsp3534A534AgcCgcT77AY.850.00299
ORF1ab/nsp3534A534AgcCgcT77AY.920.002011
ORF1ab/nsp3534A534AgcCgcT66A.2.50.002994
ORF1ab/nsp3534A534AgcCgcT66AY.450.00073
ORF1ab/nsp3534A534AgcCgcT66AY.90.000406
ORF1ab/nsp3534A534AgcCgcT66B.1.1.3060.00263
ORF1ab/nsp3534A534AgcCgcT66B.1.160.110.034286
ORF1ab/nsp3534A534AgcCgcT66B.1.177.800.011472
ORF1ab/nsp3534A534AgcCgcT66B.1.4200.0625
ORF1ab/nsp3534A534AgcCgcT66B.1.6270.012121
ORF1ab/nsp3534A534AgcCgcT66C.36.30.003403
ORF1ab/nsp3534A534AgcCgcT55AY.120.00158
ORF1ab/nsp3534A534AgcCgcT55AY.640.002976
ORF1ab/nsp3534A534AgcCgcT55AY.710.002375
ORF1ab/nsp3534A534AgcCgcT45B0.000511
ORF1ab/nsp3534A534AgcCgcA15B0.000128
ORF1ab/nsp3534A534AgcCgcT55B.1.177.350.003455
ORF1ab/nsp3534A534AgcCgcT55B.1.3910.005637
ORF1ab/nsp3534A534AgcCgcT55B.1.4000.002145
ORF1ab/nsp3534A534AgcCgcT45B.1.466.20.001565
ORF1ab/nsp3534A534AgcCgcA15B.1.466.20.000391
ORF1ab/nsp3534A534AgcCgcT55B.1.5610.001985
ORF1ab/nsp3534A534AgcCgcT44AY.3.10.000341
ORF1ab/nsp3534A534AgcCgcT44AY.540.000381
ORF1ab/nsp3534A534AgcCgcT44AY.60.000165
ORF1ab/nsp3534A534AgcCgcT44AY.750.000224
ORF1ab/nsp3534A534AgcCgcA24B.1.177.210.000153
ORF1ab/nsp3534A534AgcCgcT24B.1.177.210.000153
ORF1ab/nsp3534A534AgcCgcT44B.1.3110.001098
ORF1ab/nsp3534A534AgcCgcT34B.1.36.290.001552
ORF1ab/nsp3534A534AgcCgcA14B.1.36.290.000517
ORF1ab/nsp3534A534AgcCgcT44B.1.5230.009804
ORF1ab/nsp3534A534AgcCgcT44B.1.6190.003484
ORF1ab/nsp3534A534AgcCgcT44C.260.029412
ORF1ab/nsp3534A534AgcCgcT44D.20.0003
ORF1ab/nsp3534A534AgcCgcA230.111111
ORF1ab/nsp3534A534AgcCgcG130.055556
ORF1ab/nsp3534A534AgcCgcT23AD.20.000438
ORF1ab/nsp3534A534AgcCgcA13AD.20.000219
ORF1ab/nsp3534A534AgcCgcT33AY.1040.005952
ORF1ab/nsp3534A534AgcCgcT33AY.1060.001005
ORF1ab/nsp3534A534AgcCgcT33AY.1090.002219
ORF1ab/nsp3534A534AgcCgcT33AY.1130.000427
ORF1ab/nsp3534A534AgcCgcT33AY.16.10.00141
ORF1ab/nsp3534A534AgcCgcT33AY.4.50.000322
ORF1ab/nsp3534A534AgcCgcT33AY.5.30.001012
ORF1ab/nsp3534A534AgcCgcT33AY.680.000821
ORF1ab/nsp3534A534AgcCgcT33AY.700.000626
ORF1ab/nsp3534A534AgcCgcT33AY.930.000819
ORF1ab/nsp3534A534AgcCgcT33AY.940.001328
ORF1ab/nsp3534A534AgcCgcT33B.1.1.4200.003018
ORF1ab/nsp3534A534AgcCgcT33B.1.177.600.000655
ORF1ab/nsp3534A534AgcCgcT33B.1.351.30.002629
ORF1ab/nsp3534A534AgcCgcT33B.1.36.10.003421
ORF1ab/nsp3534A534AgcCgcT33B.1.4690.01083
ORF1ab/nsp3534A534AgcCgcT33B.1.5750.00091
ORF1ab/nsp3534A534AgcCgcT33B.1.60.051724
ORF1ab/nsp3534A534AgcCgcT33B.1.6090.001438
ORF1ab/nsp3534A534AgcCgcT23P.1.120.000968
ORF1ab/nsp3534A534AgcCgcA13P.1.120.000484
ORF1ab/nsp3534A534AgcCgcT22AY.10.000791
ORF1ab/nsp3534A534AgcCgcT22AY.1010.000981
ORF1ab/nsp3534A534AgcCgcT22AY.1140.000462
ORF1ab/nsp3534A534AgcCgcT22AY.240.000862
ORF1ab/nsp3534A534AgcCgcT22AY.320.001065
ORF1ab/nsp3534A534AgcCgcT22AY.350.000466
ORF1ab/nsp3534A534AgcCgcT22AY.360.000296
ORF1ab/nsp3534A534AgcCgcT22AY.46.40.000329
ORF1ab/nsp3534A534AgcCgcT22AY.550.001835
ORF1ab/nsp3534A534AgcCgcT22AY.730.001331
ORF1ab/nsp3534A534AgcCgcT22AY.950.001522
ORF1ab/nsp3534A534AgcCgcT22AZ.20.001642
ORF1ab/nsp3534A534AgcCgcT22B.1.1.1570.001826
ORF1ab/nsp3534A534AgcCgcT22B.1.1.2160.001781
ORF1ab/nsp3534A534AgcCgcT22B.1.1.250.001137
ORF1ab/nsp3534A534AgcCgcT22B.1.1.2980.001724
ORF1ab/nsp3534A534AgcCgcT22B.1.1.3170.000823
ORF1ab/nsp3534A534AgcCgcT22B.1.1.3180.000604
ORF1ab/nsp3534A534AgcCgcT22B.1.1.3480.001592
ORF1ab/nsp3534A534AgcCgcT22B.1.1.3980.006452
ORF1ab/nsp3534A534AgcCgcT12B.1.1.4090.002833
ORF1ab/nsp3534A534AgcCgcA12B.1.1.4090.002833
ORF1ab/nsp3534A534AgcCgcT22B.1.1.500.001358
ORF1ab/nsp3534A534AgcCgcT22B.1.110.30.001437
ORF1ab/nsp3534A534AgcCgcT22B.1.177.190.002861
ORF1ab/nsp3534A534AgcCgcT22B.1.177.70.00033
ORF1ab/nsp3534A534AgcCgcT22B.1.177.730.001133
ORF1ab/nsp3534A534AgcCgcT22B.1.390.007812
ORF1ab/nsp3534A534AgcCgcT22B.1.4930.051282
ORF1ab/nsp3534A534AgcCgcT22B.1.4990.002101
ORF1ab/nsp3534A534AgcCgcT22B.1.5770.001375
ORF1ab/nsp3534A534AgcCgcT22B.1.5950.000522
ORF1ab/nsp3534A534AgcCgcT22B.1.617.10.000258
ORF1ab/nsp3534A534AgcCgcT22L.30.007092
ORF1ab/nsp3534A534AgcCgcT12P.1.10.000318
ORF1ab/nsp3534A534AgcCgcA12P.1.10.000318
ORF1ab/nsp3534A534AgcCgcT22P.1.20.002312
ORF1ab/nsp3534A534AgcCgcT11A.210.00277
ORF1ab/nsp3534A534AgcCgcT11A.50.001923
ORF1ab/nsp3534A534AgcCgcT11AY.120.10.000321
ORF1ab/nsp3534A534AgcCgcT11AY.160.00038
ORF1ab/nsp3534A534AgcCgcT11AY.270.000065
ORF1ab/nsp3534A534AgcCgcT11AY.29.10.000221
ORF1ab/nsp3534A534AgcCgcT11AY.380.000499
ORF1ab/nsp3534A534AgcCgcT11AY.400.000964
ORF1ab/nsp3534A534AgcCgcT11AY.46.10.001027
ORF1ab/nsp3534A534AgcCgcT11AY.46.20.000635
ORF1ab/nsp3534A534AgcCgcT11AY.46.30.000934
ORF1ab/nsp3534A534AgcCgcT11AY.46.60.000072
ORF1ab/nsp3534A534AgcCgcT11AY.5.40.000277
ORF1ab/nsp3534A534AgcCgcT11AY.530.000288
ORF1ab/nsp3534A534AgcCgcA11AY.610.000105
ORF1ab/nsp3534A534AgcCgcT11AY.620.000436
ORF1ab/nsp3534A534AgcCgcT11AY.670.000464
ORF1ab/nsp3534A534AgcCgcT11AY.7.10.000113
ORF1ab/nsp3534A534AgcCgcA11AY.75.10.00018
ORF1ab/nsp3534A534AgcCgcT11AY.780.001541
ORF1ab/nsp3534A534AgcCgcT11B.1.1.1610.003534
ORF1ab/nsp3534A534AgcCgcT11B.1.1.1760.000439
ORF1ab/nsp3534A534AgcCgcA11B.1.1.1920.002309
ORF1ab/nsp3534A534AgcCgcT11B.1.1.2050.003717
ORF1ab/nsp3534A534AgcCgcT11B.1.1.2630.001558
ORF1ab/nsp3534A534AgcCgcT11B.1.1.2650.003155
ORF1ab/nsp3534A534AgcCgcT11B.1.1.2840.000107
ORF1ab/nsp3534A534AgcCgcT11B.1.1.2910.000742
ORF1ab/nsp3534A534AgcCgcT11B.1.1.3020.002075
ORF1ab/nsp3534A534AgcCgcT11B.1.1.3120.001912
ORF1ab/nsp3534A534AgcCgcT11B.1.1.3150.008475
ORF1ab/nsp3534A534AgcCgcT11B.1.1.3540.004386
ORF1ab/nsp3534A534AgcCgcT11B.1.1.3690.000446
ORF1ab/nsp3534A534AgcCgcA11B.1.1.3700.012658
ORF1ab/nsp3534A534AgcCgcT11B.1.1.3730.02381
ORF1ab/nsp3534A534AgcCgcT11B.1.1.3970.002252
ORF1ab/nsp3534A534AgcCgcT11B.1.1.4500.034483
ORF1ab/nsp3534A534AgcCgcT11B.1.1.5120.028571
ORF1ab/nsp3534A534AgcCgcT11B.1.1.570.011494
ORF1ab/nsp3534A534AgcCgcT11B.1.1.630.000386
ORF1ab/nsp3534A534AgcCgcT11B.1.1110.001175
ORF1ab/nsp3534A534AgcCgcT11B.1.1490.003425
ORF1ab/nsp3534A534AgcCgcT11B.1.160.80.001289
ORF1ab/nsp3534A534AgcCgcT11B.1.177.160.000664
ORF1ab/nsp3534A534AgcCgcT11B.1.177.410.0025
ORF1ab/nsp3534A534AgcCgcT11B.1.177.440.000519
ORF1ab/nsp3534A534AgcCgcT11B.1.177.570.000281
ORF1ab/nsp3534A534AgcCgcT11B.1.177.810.000189
ORF1ab/nsp3534A534AgcCgcT11B.1.177.850.005435
ORF1ab/nsp3534A534AgcCgcT11B.1.2400.000216
ORF1ab/nsp3534A534AgcCgcT11B.1.258.170.000104
ORF1ab/nsp3534A534AgcCgcT11B.1.2650.001271
ORF1ab/nsp3534A534AgcCgcT11B.1.3400.004292
ORF1ab/nsp3534A534AgcCgcT11B.1.3460.001311
ORF1ab/nsp3534A534AgcCgcT11B.1.351.20.000303
ORF1ab/nsp3534A534AgcCgcT11B.1.36.170.000494
ORF1ab/nsp3534A534AgcCgcT11B.1.36.180.00042
ORF1ab/nsp3534A534AgcCgcT11B.1.36.360.000602
ORF1ab/nsp3534A534AgcCgcT11B.1.3980.002976
ORF1ab/nsp3534A534AgcCgcT11B.1.4040.001302
ORF1ab/nsp3534A534AgcCgcT11B.1.4060.006061
ORF1ab/nsp3534A534AgcCgcT11B.1.4110.003704
ORF1ab/nsp3534A534AgcCgcT11B.1.4590.004082
ORF1ab/nsp3534A534AgcCgcT11B.1.4710.002732
ORF1ab/nsp3534A534AgcCgcT11B.1.5030.002488
ORF1ab/nsp3534A534AgcCgcT11B.1.5170.000427
ORF1ab/nsp3534A534AgcCgcT11B.1.5680.001111
ORF1ab/nsp3534A534AgcCgcT11B.1.5740.002151
ORF1ab/nsp3534A534AgcCgcT11B.1.5820.000491
ORF1ab/nsp3534A534AgcCgcT11B.1.5880.00091
ORF1ab/nsp3534A534AgcCgcT11B.1.621.10.000506
ORF1ab/nsp3534A534AgcCgcT11B.1.6230.000536
ORF1ab/nsp3534A534AgcCgcG11B.1.6360.006711
ORF1ab/nsp3534A534AgcCgcT11B.230.002924
ORF1ab/nsp3534A534AgcCgcT11B.60.00091
ORF1ab/nsp3534A534AgcCgcA11B.6.60.000889
ORF1ab/nsp3534A534AgcCgcT11C.140.004329
ORF1ab/nsp3534A534AgcCgcT11N.40.004255
ORF1ab/nsp3534A534AgcCgcT11P.1.100.000269
ORF1ab/nsp3534A534AgcCgcT11P.1.60.001946
ORF1ab/nsp3534A534AgcCgcT11P.20.000187
ORF1ab/nsp3534A534AgcCgcT11Q.10.000126
ORF1ab/nsp3534A534AgcCgcT11Q.80.000165
ORF1ab/nsp3534A534AgcCgcT11U.30.003861