CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A496S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3496A496SA1314SnonsynGcgTcg3333320.9969974205-4207
ORF1ab/nsp3496A496SA1314SnonsynGcGTcA33310.0030034205-4207

Details of the mutation A496S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3496A496SGcgTcg332333All0.000063
ORF1ab/nsp3496A496SGcGTcA1333All0
ORF1ab/nsp3496A496SGcgTcg167167AY.40.00026
ORF1ab/nsp3496A496SGcgTcg2828B.1.4290.000659
ORF1ab/nsp3496A496SGcgTcg1717B.1.1.70.000015
ORF1ab/nsp3496A496SGcgTcg1717B.1.177.600.003713
ORF1ab/nsp3496A496SGcgTcg1616AY.440.000097
ORF1ab/nsp3496A496SGcgTcg1313B0.001662
ORF1ab/nsp3496A496SGcgTcg1212B.1.617.20.000045
ORF1ab/nsp3496A496SGcgTcg77P.1.140.000335
ORF1ab/nsp3496A496SGcgTcg66C.370.000696
ORF1ab/nsp3496A496SGcgTcg55AY.1030.000031
ORF1ab/nsp3496A496SGcgTcg44B.10.000037
ORF1ab/nsp3496A496SGcgTcg34B.1.10.000054
ORF1ab/nsp3496A496SGcGTcA14B.1.10.000018
ORF1ab/nsp3496A496SGcgTcg33AY.30.00003
ORF1ab/nsp3496A496SGcgTcg33AY.430.000013
ORF1ab/nsp3496A496SGcgTcg33D.20.000225
ORF1ab/nsp3496A496SGcgTcg22AY.1020.000053
ORF1ab/nsp3496A496SGcgTcg22AY.250.000012
ORF1ab/nsp3496A496SGcgTcg22B.1.4270.000101
ORF1ab/nsp3496A496SGcgTcg11AY.1180.000063
ORF1ab/nsp3496A496SGcgTcg11AY.1200.000037
ORF1ab/nsp3496A496SGcgTcg11AY.160.00038
ORF1ab/nsp3496A496SGcgTcg11AY.200.000039
ORF1ab/nsp3496A496SGcgTcg11AY.290.000016
ORF1ab/nsp3496A496SGcgTcg11AY.390.000025
ORF1ab/nsp3496A496SGcgTcg11AY.39.10.00004
ORF1ab/nsp3496A496SGcgTcg11AY.46.20.000635
ORF1ab/nsp3496A496SGcgTcg11AY.680.000274
ORF1ab/nsp3496A496SGcgTcg11AY.9.20.000037
ORF1ab/nsp3496A496SGcgTcg11B.1.1.3850.004464
ORF1ab/nsp3496A496SGcgTcg11B.1.1.4280.009434
ORF1ab/nsp3496A496SGcgTcg11B.1.1770.000013
ORF1ab/nsp3496A496SGcgTcg11B.1.177.210.000076
ORF1ab/nsp3496A496SGcgTcg11B.1.221.10.002907
ORF1ab/nsp3496A496SGcgTcg11B.1.2580.000067
ORF1ab/nsp3496A496SGcgTcg11B.1.351.50.0006
ORF1ab/nsp3496A496SGcgTcg11B.1.438.10.000107
ORF1ab/nsp3496A496SGcgTcg11B.1.5260.000024
ORF1ab/nsp3496A496SGcgTcg11B.1.5820.000491
ORF1ab/nsp3496A496SGcgTcg11B.1.930.000934
ORF1ab/nsp3496A496SGcgTcg11P.20.000187