CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 496 | A496A | A1314A | syn | gcG | gcT | 4711 | 4159 | 0.882827 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496A | A1314A | syn | gcG | gcA | 4711 | 455 | 0.0965825 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496A | A1314A | syn | gcG | gcC | 4711 | 97 | 0.0205901 | 4205-4207 |
Details of the mutation A496A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4159 | 4711 | All | 0.000795 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 455 | 4711 | All | 0.000087 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 97 | 4711 | All | 0.000019 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 708 | 821 | B.1.1.7 | 0.000634 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 107 | 821 | B.1.1.7 | 0.000096 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 6 | 821 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 618 | 625 | AY.4 | 0.000962 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 6 | 625 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 625 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 361 | 390 | B.1.617.2 | 0.001359 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 24 | 390 | B.1.617.2 | 0.00009 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 5 | 390 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 229 | 233 | AY.43 | 0.001015 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 233 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 2 | 233 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 156 | 157 | AY.42 | 0.006276 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 157 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 150 | 150 | B.1.1.304 | 0.421348 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 136 | 140 | B.1.429 | 0.0032 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 140 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 134 | 134 | B.1.1.243 | 0.546939 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 75 | 111 | AY.3 | 0.000746 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 22 | 111 | AY.3 | 0.000219 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 14 | 111 | AY.3 | 0.000139 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 111 | 111 | B.1.177.5 | 0.137888 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 85 | 105 | B.1.2 | 0.000748 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 18 | 105 | B.1.2 | 0.000158 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 2 | 105 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 80 | 87 | AY.102 | 0.002121 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 7 | 87 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 61 | 87 | B.1 | 0.000559 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 26 | 87 | B.1 | 0.000238 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 61 | 86 | AY.44 | 0.000371 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 24 | 86 | AY.44 | 0.000146 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 86 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 54 | 81 | AY.103 | 0.000335 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 20 | 81 | AY.103 | 0.000124 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 7 | 81 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 71 | 78 | AY.119 | 0.002507 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 7 | 78 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 71 | 75 | AY.25 | 0.000427 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 3 | 75 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 75 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 55 | 55 | AY.73 | 0.036593 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 52 | 52 | AY.46.4 | 0.008554 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 52 | 52 | AY.98 | 0.004108 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 45 | 52 | P.1 | 0.000709 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 7 | 52 | P.1 | 0.00011 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 31 | 40 | B.1.177 | 0.000408 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 5 | 40 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 4 | 40 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 32 | 32 | AY.45 | 0.003894 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 25 | 31 | B.1.177.57 | 0.007024 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 31 | B.1.177.57 | 0.001686 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 29 | 29 | AY.114 | 0.006702 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 28 | 28 | B.1.1.13 | 1 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 24 | 26 | AY.20 | 0.000933 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 26 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 26 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 25 | 25 | AY.36 | 0.003705 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 25 | 25 | B.1.36.22 | 0.030193 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 18 | 23 | B.1.1 | 0.000327 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 23 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 23 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 20 | 22 | B.1.596 | 0.001743 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 22 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 12 | 21 | AY.39 | 0.000297 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 8 | 21 | AY.39 | 0.000198 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 21 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 21 | 21 | B.1.177.81 | 0.003976 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 15 | 19 | AY.98.1 | 0.000726 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 19 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 15 | 18 | B.1.351 | 0.000446 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 3 | 18 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 18 | 18 | B.1.526 | 0.000423 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 12 | 16 | B.1.36 | 0.001751 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 16 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 13 | 14 | B.1.243 | 0.000905 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 14 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 13 | 13 | AY.34 | 0.001261 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 10 | 10 | AY.46.2 | 0.006353 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 10 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 3 | 10 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 10 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 10 | 10 | B.1.1.372 | 0.006887 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 10 | 10 | B.1.369 | 0.002852 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 7 | 10 | B.1.427 | 0.000353 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 3 | 10 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 9 | 9 | A.2.5.1 | 0.043269 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 9 | 9 | AY.118 | 0.000564 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 9 | 9 | AY.14 | 0.000792 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 8 | 9 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 9 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 9 | 9 | B.1.621.1 | 0.004552 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 8 | AY.23 | 0.000418 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 8 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 8 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 8 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 8 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 8 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 6 | 8 | B.1.1.306 | 0.00263 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 8 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 8 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 8 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 8 | 8 | B.1.428 | 0.008163 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 7 | 7 | B.1.177.32 | 0.009447 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 6 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 6 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | B.1.1.434 | 0.002091 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 5 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 5 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 5 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 5 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 5 | AY.53 | 0.001438 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 5 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 5 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 5 | B | 0.000511 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 5 | B | 0.000128 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 3 | 5 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 5 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 5 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 5 | B.1.241 | 0.004058 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 4 | A.2 | 0.001985 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 4 | A.2 | 0.000662 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 3 | 4 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 4 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 2 | 4 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 4 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 4 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 4 | AY.91 | 0.002191 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 4 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 4 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 4 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 4 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 4 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | B.1.1.526 | 0.014184 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | B.1.44 | 0.033333 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 3 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 3 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 3 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 3 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 3 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 3 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 3 | B.1.1.291 | 0.001485 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 3 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.1.315 | 0.025424 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.128 | 0.001906 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 3 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 3 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 3 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 3 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.22 | 0.003953 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 3 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.416.1 | 0.004687 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 3 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 3 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.78 | 0.025641 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 2 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 2 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.1.128 | 0.014184 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.258.4 | 0.006897 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.1.273 | 0.025974 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.466 | 0.046512 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.1.505 | 0.008772 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.1.537 | 0.04 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.546 | 0.007407 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 2 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.8 | 0.003945 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.498 | 0.020408 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.572 | 0.025 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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