CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A488S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3488A488SA1306SnonsynGctTct240342323941550.9961444181-4183
ORF1ab/nsp3488A488SA1306SnonsynGcTTcC240342392490.003848264181-4183
ORF1ab/nsp3488A488SA1306SnonsynGcTTcA2403423190.000007905394181-4183

Details of the mutation A488S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3488A488SGctTct23941552403423All0.45791
ORF1ab/nsp3488A488SGcTTcC92492403423All0.001769
ORF1ab/nsp3488A488SGcTTcA192403423All0.000004
ORF1ab/nsp3488A488SGctTct633278642113AY.40.985648
ORF1ab/nsp3488A488SGcTTcC8835642113AY.40.013751
ORF1ab/nsp3488A488SGctTct224187224372B.1.617.20.844157
ORF1ab/nsp3488A488SGcTTcC183224372B.1.617.20.000689
ORF1ab/nsp3488A488SGcTTcA2224372B.1.617.20.000008
ORF1ab/nsp3488A488SGctTct203024203097AY.430.89949
ORF1ab/nsp3488A488SGcTTcC72203097AY.430.000319
ORF1ab/nsp3488A488SGcTTcA1203097AY.430.000004
ORF1ab/nsp3488A488SGctTct165741165743AY.250.996902
ORF1ab/nsp3488A488SGcTTcC2165743AY.250.000012
ORF1ab/nsp3488A488SGctTct162514162520AY.440.989184
ORF1ab/nsp3488A488SGcTTcC4162520AY.440.000024
ORF1ab/nsp3488A488SGcTTcA2162520AY.440.000012
ORF1ab/nsp3488A488SGctTct160231160292AY.1030.994884
ORF1ab/nsp3488A488SGcTTcC57160292AY.1030.000354
ORF1ab/nsp3488A488SGcTTcA4160292AY.1030.000025
ORF1ab/nsp3488A488SGctTct100248100250AY.30.997106
ORF1ab/nsp3488A488SGcTTcC2100250AY.30.00002
ORF1ab/nsp3488A488SGctTct6336863368AY.290.999543
ORF1ab/nsp3488A488SGctTct4837048372AY.50.998802
ORF1ab/nsp3488A488SGcTTcC248372AY.50.000041
ORF1ab/nsp3488A488SGctTct4608446086AY.4.20.999501
ORF1ab/nsp3488A488SGcTTcC246086AY.4.20.000043
ORF1ab/nsp3488A488SGctTct3992939947AY.390.986705
ORF1ab/nsp3488A488SGcTTcC1739947AY.390.00042
ORF1ab/nsp3488A488SGcTTcA139947AY.390.000025
ORF1ab/nsp3488A488SGctTct3764837653AY.1020.998197
ORF1ab/nsp3488A488SGcTTcA337653AY.1020.00008
ORF1ab/nsp3488A488SGcTTcC237653AY.1020.000053
ORF1ab/nsp3488A488SGctTct2820328203AY.1190.995798
ORF1ab/nsp3488A488SGctTct2686026861AY.1200.998624
ORF1ab/nsp3488A488SGcTTcC126861AY.1200.000037
ORF1ab/nsp3488A488SGctTct2554325543AY.200.992732
ORF1ab/nsp3488A488SGctTct2501525015AY.39.10.990929
ORF1ab/nsp3488A488SGctTct2471924736AY.420.994448
ORF1ab/nsp3488A488SGcTTcC1724736AY.420.000684
ORF1ab/nsp3488A488SGctTct2426724267AY.60.998067
ORF1ab/nsp3488A488SGctTct2160821608AY.1000.994111
ORF1ab/nsp3488A488SGctTct2054320545AY.98.10.994915
ORF1ab/nsp3488A488SGcTTcA220545AY.98.10.000097
ORF1ab/nsp3488A488SGctTct1586815870AY.1180.994111
ORF1ab/nsp3488A488SGcTTcC215870AY.1180.000125
ORF1ab/nsp3488A488SGctTct1483714837AY.330.990785
ORF1ab/nsp3488A488SGctTct1405414055AY.230.980261
ORF1ab/nsp3488A488SGcTTcC114055AY.230.00007
ORF1ab/nsp3488A488SGctTct1374613752AY.46.60.992563
ORF1ab/nsp3488A488SGcTTcA413752AY.46.60.000289
ORF1ab/nsp3488A488SGcTTcC213752AY.46.60.000144
ORF1ab/nsp3488A488SGctTct1246312464AY.980.984517
ORF1ab/nsp3488A488SGcTTcC112464AY.980.000079
ORF1ab/nsp3488A488SGctTct1170711707AY.3.10.998124
ORF1ab/nsp3488A488SGctTct1158311583AY.1170.978955
ORF1ab/nsp3488A488SGctTct1079310793AY.99.20.994655
ORF1ab/nsp3488A488SGctTct1023710237AY.340.992631
ORF1ab/nsp3488A488SGctTct95179518AY.460.990529
ORF1ab/nsp3488A488SGcTTcC19518AY.460.000104
ORF1ab/nsp3488A488SGctTct92759287AY.4.50.99699
ORF1ab/nsp3488A488SGcTTcC129287AY.4.50.00129
ORF1ab/nsp3488A488SGctTct88538853AY.7.10.997746
ORF1ab/nsp3488A488SGctTct80118012AY.450.974811
ORF1ab/nsp3488A488SGcTTcC18012AY.450.000122
ORF1ab/nsp3488A488SGctTct73187321AY.1210.990257
ORF1ab/nsp3488A488SGcTTcC37321AY.1210.000406
ORF1ab/nsp3488A488SGctTct68826882AY.1130.979923
ORF1ab/nsp3488A488SGctTct67166716AY.360.995405
ORF1ab/nsp3488A488SGctTct66606661AY.4.2.10.992253
ORF1ab/nsp3488A488SGcTTcC16661AY.4.2.10.000149
ORF1ab/nsp3488A488SGctTct60706070AY.46.40.998519
ORF1ab/nsp3488A488SGctTct54525452AY.1110.998535
ORF1ab/nsp3488A488SGctTct50935093AY.70.998236
ORF1ab/nsp3488A488SGctTct50405040AY.46.51
ORF1ab/nsp3488A488SGctTct45354535AY.29.11
ORF1ab/nsp3488A488SGctTct42974297AY.1140.993067
ORF1ab/nsp3488A488SGctTct42244224AY.1100.475997
ORF1ab/nsp3488A488SGctTct35413541AY.5.40.979801
ORF1ab/nsp3488A488SGctTct34813495AY.930.950573
ORF1ab/nsp3488A488SGcTTcC143495AY.930.003823
ORF1ab/nsp3488A488SGctTct33713371AY.920.9684
ORF1ab/nsp3488A488SGctTct33673367AY.410.989712
ORF1ab/nsp3488A488SGctTct33563356AY.1160.962432
ORF1ab/nsp3488A488SGctTct32023202AY.116.10.997197
ORF1ab/nsp3488A488SGctTct31423142AY.120.993047
ORF1ab/nsp3488A488SGctTct31093109AY.120.10.998074
ORF1ab/nsp3488A488SGctTct29192920AY.5.30.984818
ORF1ab/nsp3488A488SGcTTcC12920AY.5.30.000337
ORF1ab/nsp3488A488SGctTct29042904AY.1060.972539
ORF1ab/nsp3488A488SGctTct25062506AY.10.99169
ORF1ab/nsp3488A488SGctTct24332433AY.4.40.995499
ORF1ab/nsp3488A488SGctTct23962396AY.23.11
ORF1ab/nsp3488A488SGctTct23072307AY.850.985476
ORF1ab/nsp3488A488SGctTct22662266AY.840.991251
ORF1ab/nsp3488A488SGctTct22522252AY.940.996901
ORF1ab/nsp3488A488SGctTct21412141AY.1070.99767
ORF1ab/nsp3488A488SGctTct20302030AY.1010.995586
ORF1ab/nsp3488A488SGctTct20042004AY.120.2.10.998505
ORF1ab/nsp3488A488SGctTct19441944AY.34.10.991331
ORF1ab/nsp3488A488SGctTct18141814AY.320.965921
ORF1ab/nsp3488A488SGctTct17771777AY.7.20.993848
ORF1ab/nsp3488A488SGctTct14711471AY.46.20.934562
ORF1ab/nsp3488A488SGctTct14661466AY.1050.942765
ORF1ab/nsp3488A488SGctTct14491449AY.900.991786
ORF1ab/nsp3488A488SGctTct13791379AY.39.1.10.999275
ORF1ab/nsp3488A488SGctTct13441344AY.910.981738
ORF1ab/nsp3488A488SGctTct13431343AY.4.10.990413
ORF1ab/nsp3488A488SGctTct13331333AY.1090.985947
ORF1ab/nsp3488A488SGctTct12781278AY.950.972603
ORF1ab/nsp3488A488SGctTct11811181AY.4.30.994108
ORF1ab/nsp3488A488SGctTct11791179AY.870.981682
ORF1ab/nsp3488A488SGctTct11651165AY.860.966805
ORF1ab/nsp3488A488SGctTct11081109AY.880.979664
ORF1ab/nsp3488A488SGcTTcC11109AY.880.000884
ORF1ab/nsp3488A488SGctTct10611061AY.46.30.990663
ORF1ab/nsp3488A488SGctTct953957AY.46.10.978439
ORF1ab/nsp3488A488SGcTTcC4957AY.46.10.004107
ORF1ab/nsp3488A488SGctTct951951AY.470.029581
ORF1ab/nsp3488A488SGctTct930930AY.990.975866
ORF1ab/nsp3488A488SGctTct897897AY.750.050252
ORF1ab/nsp3488A488SGctTct882882AY.800.995485
ORF1ab/nsp3488A488SGctTct852852B.10.007804
ORF1ab/nsp3488A488SGctTct841841AY.770.94814
ORF1ab/nsp3488A488SGctTct825825AY.790.998789
ORF1ab/nsp3488A488SGctTct766766AY.1080.844542
ORF1ab/nsp3488A488SGctTct725725AY.120.20.931877
ORF1ab/nsp3488A488SGctTct717718AY.9.20.026335
ORF1ab/nsp3488A488SGcTTcC1718AY.9.20.000037
ORF1ab/nsp3488A488SGctTct712712AY.820.966079
ORF1ab/nsp3488A488SGctTct648648AY.39.20.998459
ORF1ab/nsp3488A488SGctTct640640AY.99.10.993789
ORF1ab/nsp3488A488SGctTct616616AY.730.409847
ORF1ab/nsp3488A488SGctTct611612AY.780.941448
ORF1ab/nsp3488A488SGcTTcC1612AY.780.001541
ORF1ab/nsp3488A488SGctTct587587AY.970.998299
ORF1ab/nsp3488A488SGctTct578578AY.830.996552
ORF1ab/nsp3488A488SGctTct497497AY.1040.986111
ORF1ab/nsp3488A488SGctTct488488AY.680.133589
ORF1ab/nsp3488A488SGctTct488488AY.810.972112
ORF1ab/nsp3488A488SGctTct473473AY.210.897533
ORF1ab/nsp3488A488SGctTct469469AY.220.981172
ORF1ab/nsp3488A488SGctTct469469AY.960.973029
ORF1ab/nsp3488A488SGctTct438438AY.550.401835
ORF1ab/nsp3488A488SGctTct403403AY.5.20.992611
ORF1ab/nsp3488A488SGctTct380380AY.740.043946
ORF1ab/nsp3488A488SGctTct347347AY.540.033085
ORF1ab/nsp3488A488SGctTct305305B0.038983
ORF1ab/nsp3488A488SGctTct289291AY.590.153072
ORF1ab/nsp3488A488SGcTTcC2291AY.590.001059
ORF1ab/nsp3488A488SGctTct287287AY.580.260436
ORF1ab/nsp3488A488SGctTct280280AY.190.31927
ORF1ab/nsp3488A488SGctTct266266AY.5.11
ORF1ab/nsp3488A488SGctTct259259AY.75.10.0467
ORF1ab/nsp3488A488SGctTct245245AY.91.10.995935
ORF1ab/nsp3488A488SGctTct226226AY.530.06498
ORF1ab/nsp3488A488SGctTct205205AY.760.990338
ORF1ab/nsp3488A488SGctTct203203AY.890.995098
ORF1ab/nsp3488A488SGctTct193193AY.520.157166
ORF1ab/nsp3488A488SGctTct188188AY.260.005322
ORF1ab/nsp3488A488SGctTct183183AY.690.034161
ORF1ab/nsp3488A488SGctTct174174AY.1150.90625
ORF1ab/nsp3488A488SGctTct174174AY.620.075817
ORF1ab/nsp3488A488SGctTct166166AY.640.09881
ORF1ab/nsp3488A488SGctTct158158AY.670.073352
ORF1ab/nsp3488A488SGctTct155155AY.100.082141
ORF1ab/nsp3488A488SGctTct152152AY.370.04804
ORF1ab/nsp3488A488SGctTct150150AY.560.24077
ORF1ab/nsp3488A488SGctTct135135AY.160.051253
ORF1ab/nsp3488A488SGctTct130130AY.630.05029
ORF1ab/nsp3488A488SGctTct104104AY.130.016742
ORF1ab/nsp3488A488SGctTct104104AY.570.068241
ORF1ab/nsp3488A488SGctTct102102AY.400.098361
ORF1ab/nsp3488A488SGctTct100100AY.140.008801
ORF1ab/nsp3488A488SGctTct8585AY.480.039535
ORF1ab/nsp3488A488SGctTct8585AY.700.017723
ORF1ab/nsp3488A488SGctTct8484AY.350.019576
ORF1ab/nsp3488A488SGctTct8383B.1.1.2341
ORF1ab/nsp3488A488SGctTct7979AY.650.042111
ORF1ab/nsp3488A488SGctTct6161AY.600.057223
ORF1ab/nsp3488A488SGctTct5353AY.110.07095
ORF1ab/nsp3488A488SGctTct5051AY.710.023753
ORF1ab/nsp3488A488SGcTTcC151AY.710.000475
ORF1ab/nsp3488A488SGctTct5151B.1.1.70.000046
ORF1ab/nsp3488A488SGctTct4949AY.380.024463
ORF1ab/nsp3488A488SGctTct4343B.1.10.00078
ORF1ab/nsp3488A488SGctTct4040AY.610.004191
ORF1ab/nsp3488A488SGctTct3737AY.240.015948
ORF1ab/nsp3488A488SGctTct3737AY.500.029576
ORF1ab/nsp3488A488SGctTct3737B.1.20.000326
ORF1ab/nsp3488A488SGctTct3535AY.490.111821
ORF1ab/nsp3488A488SGctTct3030AY.170.245902
ORF1ab/nsp3488A488SGctTct2527AY.90.00169
ORF1ab/nsp3488A488SGcTTcC227AY.90.000135
ORF1ab/nsp3488A488SGctTct2424AY.300.009497
ORF1ab/nsp3488A488SGctTct2323AY.510.020909
ORF1ab/nsp3488A488SGctTct2222B.1.5960.001917
ORF1ab/nsp3488A488SGctTct2121AY.16.10.009868
ORF1ab/nsp3488A488SGctTct2121AY.280.039698
ORF1ab/nsp3488A488SGctTct2121P.10.000331
ORF1ab/nsp3488A488SGctTct1616B.1.6210.001416
ORF1ab/nsp3488A488SGctTct1616B.1.6230.008584
ORF1ab/nsp3488A488SGctTct1515B.1.1.5260.053191
ORF1ab/nsp3488A488SGctTct1414AY.660.014973
ORF1ab/nsp3488A488SGctTct1414AY.80.008485
ORF1ab/nsp3488A488SGctTct1212AY.9.10.001005
ORF1ab/nsp3488A488SGctTct1212B.1.617.10.001548
ORF1ab/nsp3488A488SGctTct1111AY.720.014966
ORF1ab/nsp3488A488SGctTct99AY.270.000582
ORF1ab/nsp3488A488SGctTct88A0.003096
ORF1ab/nsp3488A488SGctTct77B.1.5260.000165
ORF1ab/nsp3488A488SGctTct77B.1.6280.002467
ORF1ab/nsp3488A488SGctTct55B.1.1.5190.000199
ORF1ab/nsp3488A488SGctTct55B.1.177.730.002831
ORF1ab/nsp3488A488SGctTct55B.1.2140.018315
ORF1ab/nsp3488A488SGctTct55B.1.3750.004098
ORF1ab/nsp3488A488SGctTct240.111111
ORF1ab/nsp3488A488SGcTTcC240.111111
ORF1ab/nsp3488A488SGctTct44B.1.1.5230.00625
ORF1ab/nsp3488A488SGctTct44B.1.466.20.001565
ORF1ab/nsp3488A488SGctTct44B.1.4740.007605
ORF1ab/nsp3488A488SGctTct44P.1.170.000647
ORF1ab/nsp3488A488SGctTct33AY.20.001068
ORF1ab/nsp3488A488SGctTct33B.1.1.2940.003797
ORF1ab/nsp3488A488SGctTct33B.1.1.530.041096
ORF1ab/nsp3488A488SGctTct33B.1.1770.00004
ORF1ab/nsp3488A488SGctTct33B.1.3510.000089
ORF1ab/nsp3488A488SGctTct33B.1.5760.00272
ORF1ab/nsp3488A488SGctTct33B.1.6040.051724
ORF1ab/nsp3488A488SGctTct33P.1.10.000953
ORF1ab/nsp3488A488SGctTct33P.1.120.001452
ORF1ab/nsp3488A488SGctTct22A.2.50.000998
ORF1ab/nsp3488A488SGctTct22AU.30.004219
ORF1ab/nsp3488A488SGctTct22B.1.1.280.000622
ORF1ab/nsp3488A488SGctTct22B.1.1430.042553
ORF1ab/nsp3488A488SGctTct22B.1.1580.047619
ORF1ab/nsp3488A488SGctTct22B.1.2430.000139
ORF1ab/nsp3488A488SGctTct22B.1.3350.020619
ORF1ab/nsp3488A488SGctTct22B.1.351.50.001199
ORF1ab/nsp3488A488SGctTct22B.1.4270.000101
ORF1ab/nsp3488A488SGctTct22B.1.4330.00639
ORF1ab/nsp3488A488SGctTct22B.1.6000.011696
ORF1ab/nsp3488A488SGctTct22B.1.6060.012048
ORF1ab/nsp3488A488SGctTct22B.1.6290.026667
ORF1ab/nsp3488A488SGctTct22B.1.6370.000146
ORF1ab/nsp3488A488SGctTct22B.400.000729
ORF1ab/nsp3488A488SGctTct22D.20.00015
ORF1ab/nsp3488A488SGctTct22P.1.150.000465
ORF1ab/nsp3488A488SGctTct22P.1.70.000639
ORF1ab/nsp3488A488SGctTct11A.10.000282
ORF1ab/nsp3488A488SGctTct11A.2.5.20.001572
ORF1ab/nsp3488A488SGctTct11A.23.10.000704
ORF1ab/nsp3488A488SGctTct11A.280.002646
ORF1ab/nsp3488A488SGctTct11AU.20.002421
ORF1ab/nsp3488A488SGctTct11AY.150.002222
ORF1ab/nsp3488A488SGctTct11AY.310.018519
ORF1ab/nsp3488A488SGctTct11AZ.30.00152
ORF1ab/nsp3488A488SGctTct11B.1.1.10.000327
ORF1ab/nsp3488A488SGctTct11B.1.1.2100.005714
ORF1ab/nsp3488A488SGctTct11B.1.1.2540.011236
ORF1ab/nsp3488A488SGctTct11B.1.1.2580.003257
ORF1ab/nsp3488A488SGctTct11B.1.1.3010.001179
ORF1ab/nsp3488A488SGctTct11B.1.1.3060.000438
ORF1ab/nsp3488A488SGctTct11B.1.1.3070.002532
ORF1ab/nsp3488A488SGctTct11B.1.1.3540.004386
ORF1ab/nsp3488A488SGctTct11B.1.1.3720.000689
ORF1ab/nsp3488A488SGctTct11B.1.1.4090.002833
ORF1ab/nsp3488A488SGctTct11B.1.1.500.000679
ORF1ab/nsp3488A488SGctTct11B.1.1.5120.028571
ORF1ab/nsp3488A488SGctTct11B.1.1.830.00271
ORF1ab/nsp3488A488SGctTct11B.1.1260.001276
ORF1ab/nsp3488A488SGctTct11B.1.1420.002899
ORF1ab/nsp3488A488SGctTct11B.1.1570.002985
ORF1ab/nsp3488A488SGctTct11B.1.1600.000031
ORF1ab/nsp3488A488SGctTct11B.1.177.150.000631
ORF1ab/nsp3488A488SGctTct11B.1.177.310.011494
ORF1ab/nsp3488A488SGctTct11B.1.177.860.000183
ORF1ab/nsp3488A488SGctTct11B.1.1790.003759
ORF1ab/nsp3488A488SGctTct11B.1.2080.04
ORF1ab/nsp3488A488SGctTct11B.1.2180.005155
ORF1ab/nsp3488A488SGctTct11B.1.2320.000537
ORF1ab/nsp3488A488SGctTct11B.1.2400.000216
ORF1ab/nsp3488A488SGctTct11B.1.2470.014925
ORF1ab/nsp3488A488SGctTct11B.1.2580.000067
ORF1ab/nsp3488A488SGctTct11B.1.258.110.000396
ORF1ab/nsp3488A488SGctTct11B.1.2600.003344
ORF1ab/nsp3488A488SGctTct11B.1.3010.005917
ORF1ab/nsp3488A488SGctTct11B.1.351.30.000876
ORF1ab/nsp3488A488SGctTct11B.1.3550.011111
ORF1ab/nsp3488A488SGctTct11B.1.3620.001541
ORF1ab/nsp3488A488SGctTct11B.1.3660.004878
ORF1ab/nsp3488A488SGctTct11B.1.3670.000792
ORF1ab/nsp3488A488SGctTct11B.1.3690.000285
ORF1ab/nsp3488A488SGctTct11B.1.3780.006849
ORF1ab/nsp3488A488SGctTct11B.1.3800.006623
ORF1ab/nsp3488A488SGctTct11B.1.4000.000429
ORF1ab/nsp3488A488SGctTct11B.1.4290.000024
ORF1ab/nsp3488A488SGctTct11B.1.4320.011236
ORF1ab/nsp3488A488SGctTct11B.1.4850.014925
ORF1ab/nsp3488A488SGctTct11B.1.4970.000315
ORF1ab/nsp3488A488SGctTct11B.1.5170.000427
ORF1ab/nsp3488A488SGctTct11B.1.5510.00129
ORF1ab/nsp3488A488SGctTct11B.1.5600.00463
ORF1ab/nsp3488A488SGctTct11B.1.5640.000426
ORF1ab/nsp3488A488SGctTct11B.1.5810.009434
ORF1ab/nsp3488A488SGctTct11B.1.5860.010989
ORF1ab/nsp3488A488SGctTct11B.1.5990.00365
ORF1ab/nsp3488A488SGctTct11B.1.6310.003367
ORF1ab/nsp3488A488SGctTct11B.1.6320.006711
ORF1ab/nsp3488A488SGctTct11B.1.700.02439
ORF1ab/nsp3488A488SGctTct11B.1.810.021277
ORF1ab/nsp3488A488SGctTct11B.550.00295
ORF1ab/nsp3488A488SGctTct11B.60.00091
ORF1ab/nsp3488A488SGctTct11C.1.20.004255
ORF1ab/nsp3488A488SGctTct11C.36.30.000567
ORF1ab/nsp3488A488SGctTct11C.36.3.10.002717
ORF1ab/nsp3488A488SGctTct11C.370.000116
ORF1ab/nsp3488A488SGctTct11P.1.130.000898
ORF1ab/nsp3488A488SGctTct11P.1.17.10.000875
ORF1ab/nsp3488A488SGctTct11P.70.004367