CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A488F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3488A488FA1306FnonsynGCtTTt2752730.9927274181-4183
ORF1ab/nsp3488A488FA1306FnonsynGCTTTC27520.007272734181-4183

Details of the mutation A488F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3488A488FGCtTTt273275All0.000052
ORF1ab/nsp3488A488FGCTTTC2275All0
ORF1ab/nsp3488A488FGCtTTt7678AY.40.000118
ORF1ab/nsp3488A488FGCTTTC278AY.40.000003
ORF1ab/nsp3488A488FGCtTTt3131AY.330.00207
ORF1ab/nsp3488A488FGCtTTt2828AY.30.000278
ORF1ab/nsp3488A488FGCtTTt2525AY.200.000972
ORF1ab/nsp3488A488FGCtTTt2525B.1.617.20.000094
ORF1ab/nsp3488A488FGCtTTt1919AY.440.000116
ORF1ab/nsp3488A488FGCtTTt1717AY.60.000699
ORF1ab/nsp3488A488FGCtTTt88AY.250.000048
ORF1ab/nsp3488A488FGCtTTt88AY.4.2.10.001192
ORF1ab/nsp3488A488FGCtTTt77AY.430.000031
ORF1ab/nsp3488A488FGCtTTt55AY.1030.000031
ORF1ab/nsp3488A488FGCtTTt44AY.1130.00057
ORF1ab/nsp3488A488FGCtTTt44AY.340.000388
ORF1ab/nsp3488A488FGCtTTt33AY.1020.00008
ORF1ab/nsp3488A488FGCtTTt22AY.1160.000574
ORF1ab/nsp3488A488FGCtTTt22AY.1190.000071
ORF1ab/nsp3488A488FGCtTTt22AY.290.000032
ORF1ab/nsp3488A488FGCtTTt11AY.1200.000037
ORF1ab/nsp3488A488FGCtTTt11AY.390.000025
ORF1ab/nsp3488A488FGCtTTt11AY.4.20.000022
ORF1ab/nsp3488A488FGCtTTt11AY.4.50.000107
ORF1ab/nsp3488A488FGCtTTt11AY.420.00004
ORF1ab/nsp3488A488FGCtTTt11AY.450.000122
ORF1ab/nsp3488A488FGCtTTt11AY.920.000287