CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A480del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3480A480delA1298deldelGCT---222214157-4159

Details of the mutation A480del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3480A480delGCT---2222All0.000004
ORF1ab/nsp3480A480delGCT---33B.10.000027
ORF1ab/nsp3480A480delGCT---33B.1.1.70.000003
ORF1ab/nsp3480A480delGCT---22AY.430.000009
ORF1ab/nsp3480A480delGCT---22B.1.20.000018
ORF1ab/nsp3480A480delGCT---11AY.4.50.000107
ORF1ab/nsp3480A480delGCT---11B.1.10.000018
ORF1ab/nsp3480A480delGCT---11B.1.1.390.00051
ORF1ab/nsp3480A480delGCT---11B.1.1.500.000679
ORF1ab/nsp3480A480delGCT---11B.1.1.5190.00004
ORF1ab/nsp3480A480delGCT---11B.1.360.000146
ORF1ab/nsp3480A480delGCT---11B.1.617.20.000004
ORF1ab/nsp3480A480delGCT---11B.570.015152
ORF1ab/nsp3480A480delGCT---11C.360.000911
ORF1ab/nsp3480A480delGCT---11P.10.000016
ORF1ab/nsp3480A480delGCT---11R.10.00009
ORF1ab/nsp3480A480delGCT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.