CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A480V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3480A480VA1298VnonsyngCtgTt14039140380.9999294157-4159
ORF1ab/nsp3480A480VA1298VnonsyngCTgTC1403910.00007123014157-4159

Details of the mutation A480V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3480A480VgCtgTt1403814039All0.002685
ORF1ab/nsp3480A480VgCTgTC114039All0
ORF1ab/nsp3480A480VgCtgTt61116111AY.40.009511
ORF1ab/nsp3480A480VgCtgTt11511151B.1.1.70.00103
ORF1ab/nsp3480A480VgCtgTt829829B.1.1.2790.929372
ORF1ab/nsp3480A480VgCtgTt641641B.1.1.1570.585388
ORF1ab/nsp3480A480VgCtgTt394394B.1.5950.102818
ORF1ab/nsp3480A480VgCtgTt379379AY.250.00228
ORF1ab/nsp3480A480VgCtgTt366366B.1.2340.048291
ORF1ab/nsp3480A480VgCtgTt283283B.1.20.002492
ORF1ab/nsp3480A480VgCtgTt252252B.1.617.20.000949
ORF1ab/nsp3480A480VgCtgTt208208AY.440.001266
ORF1ab/nsp3480A480VgCtgTt205205AY.430.000908
ORF1ab/nsp3480A480VgCtgTt204204AY.1030.001267
ORF1ab/nsp3480A480VgCtgTt172172B.1.1770.002265
ORF1ab/nsp3480A480VgCtgTt152152B.1.4290.003576
ORF1ab/nsp3480A480VgCtgTt133133B.1.4270.006716
ORF1ab/nsp3480A480VgCtgTt131131B.1.10.002376
ORF1ab/nsp3480A480VgCtgTt116116B.10.001063
ORF1ab/nsp3480A480VgCtgTt9292AY.4.10.067847
ORF1ab/nsp3480A480VgCtgTt9090B.1.177.50.111801
ORF1ab/nsp3480A480VgCtgTt8888P.10.001386
ORF1ab/nsp3480A480VgCtgTt8484B.1.1600.00262
ORF1ab/nsp3480A480VgCtgTt8080AY.70.01568
ORF1ab/nsp3480A480VgCtgTt8080B.1.2390.09768
ORF1ab/nsp3480A480VgCtgTt8080P.1.170.012941
ORF1ab/nsp3480A480VgCtgTt7171B.1.6210.006285
ORF1ab/nsp3480A480VgCtgTt6464AY.30.000637
ORF1ab/nsp3480A480VgCtgTt6363AY.600.059099
ORF1ab/nsp3480A480VgCtgTt6262B.1.1.4860.097792
ORF1ab/nsp3480A480VgCtgTt5959B.1.177.540.035779
ORF1ab/nsp3480A480VgCtgTt5656AY.290.000883
ORF1ab/nsp3480A480VgCtgTt4949AY.730.032601
ORF1ab/nsp3480A480VgCtgTt4545B.1.177.580.05992
ORF1ab/nsp3480A480VgCtgTt3434B.1.1.3480.02707
ORF1ab/nsp3480A480VgCtgTt3232AY.3.10.002728
ORF1ab/nsp3480A480VgCtgTt3232AY.390.000791
ORF1ab/nsp3480A480VgCtgTt3131P.1.140.001482
ORF1ab/nsp3480A480VgCtgTt2929B.1.5260.000682
ORF1ab/nsp3480A480VgCtgTt2828AY.260.000793
ORF1ab/nsp3480A480VgCtgTt2828P.20.005226
ORF1ab/nsp3480A480VgCtgTt2626B.1.1.5190.001032
ORF1ab/nsp3480A480VgCtgTt2525B.1.6370.001827
ORF1ab/nsp3480A480VgCtgTt2323AY.39.10.000911
ORF1ab/nsp3480A480VgCtgTt2222AY.1020.000583
ORF1ab/nsp3480A480VgCtgTt2222B.1.3510.000654
ORF1ab/nsp3480A480VgCtgTt2121AY.120.20.026992
ORF1ab/nsp3480A480VgCtgTt1818AY.1190.000636
ORF1ab/nsp3480A480VgCtgTt1818AY.4.20.00039
ORF1ab/nsp3480A480VgCtgTt1818B.1.2330.253521
ORF1ab/nsp3480A480VgCtgTt1818B.1.2430.001253
ORF1ab/nsp3480A480VgCtgTt1818Q.10.002274
ORF1ab/nsp3480A480VgCtgTt1818Q.30.002611
ORF1ab/nsp3480A480VgCtgTt1717AY.420.000684
ORF1ab/nsp3480A480VgCtgTt1717B.1.177.600.003713
ORF1ab/nsp3480A480VgCtgTt1515AY.200.000583
ORF1ab/nsp3480A480VgCtgTt1515B.1.2580.000998
ORF1ab/nsp3480A480VgCtgTt1515B.1.466.20.005869
ORF1ab/nsp3480A480VgCtgTt1515B.1.5960.001307
ORF1ab/nsp3480A480VgCtgTt1414AY.60.000576
ORF1ab/nsp3480A480VgCtgTt1313AY.1170.001099
ORF1ab/nsp3480A480VgCtgTt1313B.1.177.860.002385
ORF1ab/nsp3480A480VgCtgTt1313B.1.3690.003708
ORF1ab/nsp3480A480VgCtgTt1111AY.1210.001488
ORF1ab/nsp3480A480VgCtgTt1111AY.470.000342
ORF1ab/nsp3480A480VgCtgTt1111B.1.1.2200.020446
ORF1ab/nsp3480A480VgCtgTt1111B.1.1.3180.003319
ORF1ab/nsp3480A480VgCtgTt1111B.1.36.290.005691
ORF1ab/nsp3480A480VgCtgTt1111P.1.120.005324
ORF1ab/nsp3480A480VgCtgTt1010A.2.5.10.048077
ORF1ab/nsp3480A480VgCtgTt1010B.1.2210.00071
ORF1ab/nsp3480A480VgCtgTt1010B.1.5770.006873
ORF1ab/nsp3480A480VgCtgTt1010B.1.6090.004794
ORF1ab/nsp3480A480VgCtgTt99AY.330.000601
ORF1ab/nsp3480A480VgCtgTt99AY.750.000504
ORF1ab/nsp3480A480VgCtgTt99AY.9.20.000331
ORF1ab/nsp3480A480VgCtgTt88AY.1200.000297
ORF1ab/nsp3480A480VgCtgTt88AY.98.10.000387
ORF1ab/nsp3480A480VgCtgTt88B0.001022
ORF1ab/nsp3480A480VgCtgTt88B.1.1.2090.071429
ORF1ab/nsp3480A480VgCtgTt88B.1.4990.008403
ORF1ab/nsp3480A480VgCtgTt88B.1.617.10.001032
ORF1ab/nsp3480A480VgCtgTt88N.60.056738
ORF1ab/nsp3480A480VgCtgTt77AD.20.001533
ORF1ab/nsp3480A480VgCtgTt77AY.340.000679
ORF1ab/nsp3480A480VgCtgTt77AY.46.40.001152
ORF1ab/nsp3480A480VgCtgTt77AY.50.000145
ORF1ab/nsp3480A480VgCtgTt77AY.980.000553
ORF1ab/nsp3480A480VgCtgTt77B.1.177.180.008121
ORF1ab/nsp3480A480VgCtgTt77C.370.000812
ORF1ab/nsp3480A480VgCtgTt66AY.1000.000276
ORF1ab/nsp3480A480VgCtgTt66AY.1180.000376
ORF1ab/nsp3480A480VgCtgTt66AY.270.000388
ORF1ab/nsp3480A480VgCtgTt66B.1.1.2840.000644
ORF1ab/nsp3480A480VgCtgTt66B.1.1.630.002315
ORF1ab/nsp3480A480VgCtgTt66B.1.2410.00487
ORF1ab/nsp3480A480VgCtgTt66B.1.3620.009245
ORF1ab/nsp3480A480VgCtgTt66B.1.5170.002562
ORF1ab/nsp3480A480VgCtgTt66P.1.150.001394
ORF1ab/nsp3480A480VgCtgTt55AY.140.00044
ORF1ab/nsp3480A480VgCtgTt55AY.5.30.001687
ORF1ab/nsp3480A480VgCtgTt55AY.99.20.000461
ORF1ab/nsp3480A480VgCtgTt55B.1.1.2140.000277
ORF1ab/nsp3480A480VgCtgTt55B.1.1.700.001705
ORF1ab/nsp3480A480VgCtgTt55B.1.3360.012195
ORF1ab/nsp3480A480VgCtgTt55B.1.360.00073
ORF1ab/nsp3480A480VgCtgTt55B.1.3980.014881
ORF1ab/nsp3480A480VgCtgTt55B.1.4160.006345
ORF1ab/nsp3480A480VgCtgTt55C.360.004554
ORF1ab/nsp3480A480VgCtgTt55Q.80.000825
ORF1ab/nsp3480A480VgCtgTt55R.10.00045
ORF1ab/nsp3480A480VgCtgTt44AY.130.000644
ORF1ab/nsp3480A480VgCtgTt44AY.46.50.000794
ORF1ab/nsp3480A480VgCtgTt44AY.7.10.000451
ORF1ab/nsp3480A480VgCtgTt44B.1.1.2220.000816
ORF1ab/nsp3480A480VgCtgTt44B.1.1.3290.015385
ORF1ab/nsp3480A480VgCtgTt44B.1.1.330.001684
ORF1ab/nsp3480A480VgCtgTt44B.1.1.3820.142857
ORF1ab/nsp3480A480VgCtgTt44B.1.1.390.002039
ORF1ab/nsp3480A480VgCtgTt44B.1.4090.003125
ORF1ab/nsp3480A480VgCtgTt44B.1.5230.009804
ORF1ab/nsp3480A480VgCtgTt44B.1.5750.001214
ORF1ab/nsp3480A480VgCtgTt33AY.230.000209
ORF1ab/nsp3480A480VgCtgTt33AY.240.001293
ORF1ab/nsp3480A480VgCtgTt33AY.350.000699
ORF1ab/nsp3480A480VgCtgTt33AY.360.000445
ORF1ab/nsp3480A480VgCtgTt33AY.450.000365
ORF1ab/nsp3480A480VgCtgTt33AY.460.000312
ORF1ab/nsp3480A480VgCtgTt33AY.590.001589
ORF1ab/nsp3480A480VgCtgTt33AY.610.000314
ORF1ab/nsp3480A480VgCtgTt33AY.680.000821
ORF1ab/nsp3480A480VgCtgTt33AY.690.00056
ORF1ab/nsp3480A480VgCtgTt33AY.75.10.000541
ORF1ab/nsp3480A480VgCtgTt33AY.90.000203
ORF1ab/nsp3480A480VgCtgTt33B.1.1.3010.003538
ORF1ab/nsp3480A480VgCtgTt33B.1.1.3170.001235
ORF1ab/nsp3480A480VgCtgTt33B.1.1.370.000579
ORF1ab/nsp3480A480VgCtgTt33B.1.1.5060.111111
ORF1ab/nsp3480A480VgCtgTt33B.1.110.30.002155
ORF1ab/nsp3480A480VgCtgTt33B.1.177.70.000495
ORF1ab/nsp3480A480VgCtgTt33B.60.00273
ORF1ab/nsp3480A480VgCtgTt33P.1.40.00293
ORF1ab/nsp3480A480VgCTgTC120.055556
ORF1ab/nsp3480A480VgCtgTt120.055556
ORF1ab/nsp3480A480VgCtgTt22AY.1050.001286
ORF1ab/nsp3480A480VgCtgTt22AY.1070.000932
ORF1ab/nsp3480A480VgCtgTt22AY.1140.000462
ORF1ab/nsp3480A480VgCtgTt22AY.280.003781
ORF1ab/nsp3480A480VgCtgTt22AY.5.40.000553
ORF1ab/nsp3480A480VgCtgTt22AY.500.001599
ORF1ab/nsp3480A480VgCtgTt22AY.540.000191
ORF1ab/nsp3480A480VgCtgTt22AY.560.00321
ORF1ab/nsp3480A480VgCtgTt22AY.700.000417
ORF1ab/nsp3480A480VgCtgTt22AY.710.00095
ORF1ab/nsp3480A480VgCtgTt22AY.790.002421
ORF1ab/nsp3480A480VgCtgTt22AY.840.000875
ORF1ab/nsp3480A480VgCtgTt22AY.860.00166
ORF1ab/nsp3480A480VgCtgTt22AY.940.000885
ORF1ab/nsp3480A480VgCtgTt22AZ.50.007018
ORF1ab/nsp3480A480VgCtgTt22B.1.1.1140.133333
ORF1ab/nsp3480A480VgCtgTt22B.1.1.2800.006173
ORF1ab/nsp3480A480VgCtgTt22B.1.1.4090.005666
ORF1ab/nsp3480A480VgCtgTt22B.1.1.4340.000697
ORF1ab/nsp3480A480VgCtgTt22B.1.1.5230.003125
ORF1ab/nsp3480A480VgCtgTt22B.1.1470.001512
ORF1ab/nsp3480A480VgCtgTt22B.1.177.150.001262
ORF1ab/nsp3480A480VgCtgTt22B.1.177.210.000153
ORF1ab/nsp3480A480VgCtgTt22B.1.177.440.001038
ORF1ab/nsp3480A480VgCtgTt22B.1.214.30.014286
ORF1ab/nsp3480A480VgCtgTt22B.1.2400.000431
ORF1ab/nsp3480A480VgCtgTt22B.1.258.110.000793
ORF1ab/nsp3480A480VgCtgTt22B.1.258.170.000208
ORF1ab/nsp3480A480VgCtgTt22B.1.36.180.00084
ORF1ab/nsp3480A480VgCtgTt22B.1.36.270.001527
ORF1ab/nsp3480A480VgCtgTt22B.1.36.310.003503
ORF1ab/nsp3480A480VgCtgTt22B.1.36.90.006431
ORF1ab/nsp3480A480VgCtgTt22B.1.5250.000226
ORF1ab/nsp3480A480VgCtgTt22B.1.5650.001621
ORF1ab/nsp3480A480VgCtgTt22P.1.100.000539
ORF1ab/nsp3480A480VgCtgTt22P.1.20.002312
ORF1ab/nsp3480A480VgCtgTt22P.1.70.000639
ORF1ab/nsp3480A480VgCtgTt11A.10.000282
ORF1ab/nsp3480A480VgCtgTt11A.2.40.003367
ORF1ab/nsp3480A480VgCtgTt11A.2.50.000499
ORF1ab/nsp3480A480VgCtgTt11A.23.10.000704
ORF1ab/nsp3480A480VgCtgTt11AB.10.008197
ORF1ab/nsp3480A480VgCtgTt11AY.100.00053
ORF1ab/nsp3480A480VgCtgTt11AY.1100.000113
ORF1ab/nsp3480A480VgCtgTt11AY.1130.000142
ORF1ab/nsp3480A480VgCtgTt11AY.1160.000287
ORF1ab/nsp3480A480VgCtgTt11AY.120.10.000321
ORF1ab/nsp3480A480VgCtgTt11AY.160.00038
ORF1ab/nsp3480A480VgCtgTt11AY.16.10.00047
ORF1ab/nsp3480A480VgCtgTt11AY.300.000396
ORF1ab/nsp3480A480VgCtgTt11AY.320.000532
ORF1ab/nsp3480A480VgCtgTt11AY.380.000499
ORF1ab/nsp3480A480VgCtgTt11AY.4.2.10.000149
ORF1ab/nsp3480A480VgCtgTt11AY.4.50.000107
ORF1ab/nsp3480A480VgCtgTt11AY.46.60.000072
ORF1ab/nsp3480A480VgCtgTt11AY.480.000465
ORF1ab/nsp3480A480VgCtgTt11AY.670.000464
ORF1ab/nsp3480A480VgCtgTt11AY.7.20.000559
ORF1ab/nsp3480A480VgCtgTt11AY.770.001127
ORF1ab/nsp3480A480VgCtgTt11AY.800.001129
ORF1ab/nsp3480A480VgCtgTt11AY.810.001992
ORF1ab/nsp3480A480VgCtgTt11AY.9.10.000084
ORF1ab/nsp3480A480VgCtgTt11AY.930.000273
ORF1ab/nsp3480A480VgCtgTt11B.1.1.100.001115
ORF1ab/nsp3480A480VgCtgTt11B.1.1.120.007463
ORF1ab/nsp3480A480VgCtgTt11B.1.1.1610.003534
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2050.003717
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2160.00089
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2280.003049
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2770.000759
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2940.001266
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2970.002237
ORF1ab/nsp3480A480VgCtgTt11B.1.1.3060.000438
ORF1ab/nsp3480A480VgCtgTt11B.1.1.3120.001912
ORF1ab/nsp3480A480VgCtgTt11B.1.1.3630.005988
ORF1ab/nsp3480A480VgCtgTt11B.1.1.3720.000689
ORF1ab/nsp3480A480VgCtgTt11B.1.1.4170.002703
ORF1ab/nsp3480A480VgCtgTt11B.1.1.4320.001266
ORF1ab/nsp3480A480VgCtgTt11B.1.1.4460.076923
ORF1ab/nsp3480A480VgCtgTt11B.1.1.5260.003546
ORF1ab/nsp3480A480VgCtgTt11B.1.1150.021739
ORF1ab/nsp3480A480VgCtgTt11B.1.1270.002198
ORF1ab/nsp3480A480VgCtgTt11B.1.1280.000635
ORF1ab/nsp3480A480VgCtgTt11B.1.1490.003425
ORF1ab/nsp3480A480VgCtgTt11B.1.160.290.004219
ORF1ab/nsp3480A480VgCtgTt11B.1.160.80.001289
ORF1ab/nsp3480A480VgCtgTt11B.1.177.120.000152
ORF1ab/nsp3480A480VgCtgTt11B.1.177.160.000664
ORF1ab/nsp3480A480VgCtgTt11B.1.177.170.000821
ORF1ab/nsp3480A480VgCtgTt11B.1.177.730.000566
ORF1ab/nsp3480A480VgCtgTt11B.1.177.750.001041
ORF1ab/nsp3480A480VgCtgTt11B.1.177.770.000726
ORF1ab/nsp3480A480VgCtgTt11B.1.177.810.000189
ORF1ab/nsp3480A480VgCtgTt11B.1.177.830.001481
ORF1ab/nsp3480A480VgCtgTt11B.1.177.870.000728
ORF1ab/nsp3480A480VgCtgTt11B.1.1990.004132
ORF1ab/nsp3480A480VgCtgTt11B.1.2060.000816
ORF1ab/nsp3480A480VgCtgTt11B.1.2100.002132
ORF1ab/nsp3480A480VgCtgTt11B.1.2370.004975
ORF1ab/nsp3480A480VgCtgTt11B.1.258.140.00098
ORF1ab/nsp3480A480VgCtgTt11B.1.2980.002114
ORF1ab/nsp3480A480VgCtgTt11B.1.3110.000275
ORF1ab/nsp3480A480VgCtgTt11B.1.3240.001605
ORF1ab/nsp3480A480VgCtgTt11B.1.3380.008621
ORF1ab/nsp3480A480VgCtgTt11B.1.36.190.009259
ORF1ab/nsp3480A480VgCtgTt11B.1.36.220.001208
ORF1ab/nsp3480A480VgCtgTt11B.1.36.250.002208
ORF1ab/nsp3480A480VgCtgTt11B.1.36.360.000602
ORF1ab/nsp3480A480VgCtgTt11B.1.36.80.001
ORF1ab/nsp3480A480VgCtgTt11B.1.3660.004878
ORF1ab/nsp3480A480VgCtgTt11B.1.4170.028571
ORF1ab/nsp3480A480VgCtgTt11B.1.4230.010204
ORF1ab/nsp3480A480VgCtgTt11B.1.438.10.000107
ORF1ab/nsp3480A480VgCtgTt11B.1.4530.003236
ORF1ab/nsp3480A480VgCtgTt11B.1.4590.004082
ORF1ab/nsp3480A480VgCtgTt11B.1.466.10.007194
ORF1ab/nsp3480A480VgCtgTt11B.1.4690.00361
ORF1ab/nsp3480A480VgCtgTt11B.1.4700.001404
ORF1ab/nsp3480A480VgCtgTt11B.1.4800.002488
ORF1ab/nsp3480A480VgCtgTt11B.1.4970.000315
ORF1ab/nsp3480A480VgCtgTt11B.1.5270.003704
ORF1ab/nsp3480A480VgCtgTt11B.1.5490.007194
ORF1ab/nsp3480A480VgCtgTt11B.1.5510.00129
ORF1ab/nsp3480A480VgCtgTt11B.1.5600.00463
ORF1ab/nsp3480A480VgCtgTt11B.1.5690.014493
ORF1ab/nsp3480A480VgCtgTt11B.1.5800.004065
ORF1ab/nsp3480A480VgCtgTt11B.1.621.10.000506
ORF1ab/nsp3480A480VgCtgTt11B.1.6320.006711
ORF1ab/nsp3480A480VgCtgTt11B.1.80.001972
ORF1ab/nsp3480A480VgCtgTt11B.1.930.000934
ORF1ab/nsp3480A480VgCtgTt11B.290.003509
ORF1ab/nsp3480A480VgCtgTt11B.30.000831
ORF1ab/nsp3480A480VgCtgTt11B.40.002208
ORF1ab/nsp3480A480VgCtgTt11B.400.000364
ORF1ab/nsp3480A480VgCtgTt11B.550.00295
ORF1ab/nsp3480A480VgCtgTt11B.6.60.000889
ORF1ab/nsp3480A480VgCtgTt11C.170.055556
ORF1ab/nsp3480A480VgCtgTt11C.350.000774
ORF1ab/nsp3480A480VgCtgTt11C.36.3.10.002717
ORF1ab/nsp3480A480VgCtgTt11D.20.000075
ORF1ab/nsp3480A480VgCtgTt11K.20.04
ORF1ab/nsp3480A480VgCtgTt11L.30.003546
ORF1ab/nsp3480A480VgCtgTt11N.10.016949
ORF1ab/nsp3480A480VgCtgTt11N.50.001767
ORF1ab/nsp3480A480VgCtgTt11N.90.005952
ORF1ab/nsp3480A480VgCtgTt11P.1.17.10.000875

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.