CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A480A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3480A480AA1298AsyngcTgcC1901440.7578954157-4159
ORF1ab/nsp3480A480AA1298AsyngcTgcA190240.1263164157-4159
ORF1ab/nsp3480A480AA1298AsyngcTgcG190220.1157894157-4159

Details of the mutation A480A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3480A480AgcTgcC144190All0.000028
ORF1ab/nsp3480A480AgcTgcA24190All0.000005
ORF1ab/nsp3480A480AgcTgcG22190All0.000004
ORF1ab/nsp3480A480AgcTgcC2931B.1.1.70.000026
ORF1ab/nsp3480A480AgcTgcG131B.1.1.70.000001
ORF1ab/nsp3480A480AgcTgcA131B.1.1.70.000001
ORF1ab/nsp3480A480AgcTgcC1722AY.40.000026
ORF1ab/nsp3480A480AgcTgcG322AY.40.000005
ORF1ab/nsp3480A480AgcTgcA222AY.40.000003
ORF1ab/nsp3480A480AgcTgcC1919AY.1020.000504
ORF1ab/nsp3480A480AgcTgcA716B.1.617.20.000026
ORF1ab/nsp3480A480AgcTgcC616B.1.617.20.000023
ORF1ab/nsp3480A480AgcTgcG316B.1.617.20.000011
ORF1ab/nsp3480A480AgcTgcC1010B.1.4290.000235
ORF1ab/nsp3480A480AgcTgcG59AY.440.00003
ORF1ab/nsp3480A480AgcTgcC49AY.440.000024
ORF1ab/nsp3480A480AgcTgcC77AH.11
ORF1ab/nsp3480A480AgcTgcA34AY.430.000013
ORF1ab/nsp3480A480AgcTgcC14AY.430.000004
ORF1ab/nsp3480A480AgcTgcC44B.1.36.80.004
ORF1ab/nsp3480A480AgcTgcA44B.1.5260.000094
ORF1ab/nsp3480A480AgcTgcC44C.260.029412
ORF1ab/nsp3480A480AgcTgcC23AY.1030.000012
ORF1ab/nsp3480A480AgcTgcA13AY.1030.000006
ORF1ab/nsp3480A480AgcTgcG33B.1.1.500.002037
ORF1ab/nsp3480A480AgcTgcC33B.1.1.630.001157
ORF1ab/nsp3480A480AgcTgcC33B.1.20.000026
ORF1ab/nsp3480A480AgcTgcG12AY.1180.000063
ORF1ab/nsp3480A480AgcTgcC12AY.1180.000063
ORF1ab/nsp3480A480AgcTgcC22AY.470.000062
ORF1ab/nsp3480A480AgcTgcA22AY.580.001815
ORF1ab/nsp3480A480AgcTgcA12B.10.000009
ORF1ab/nsp3480A480AgcTgcG12B.10.000009
ORF1ab/nsp3480A480AgcTgcC12B.1.10.000018
ORF1ab/nsp3480A480AgcTgcA12B.1.10.000018
ORF1ab/nsp3480A480AgcTgcC22B.1.1.2510.015873
ORF1ab/nsp3480A480AgcTgcA22B.1.1.4470.071429
ORF1ab/nsp3480A480AgcTgcC22B.1.1.5190.000079
ORF1ab/nsp3480A480AgcTgcG22B.1.1770.000026
ORF1ab/nsp3480A480AgcTgcC22B.1.258.170.000208
ORF1ab/nsp3480A480AgcTgcC22P.10.000032
ORF1ab/nsp3480A480AgcTgcC22Q.30.00029
ORF1ab/nsp3480A480AgcTgcC110.055556
ORF1ab/nsp3480A480AgcTgcC11A.23.10.000704
ORF1ab/nsp3480A480AgcTgcC11AY.1210.000135
ORF1ab/nsp3480A480AgcTgcC11AY.260.000028
ORF1ab/nsp3480A480AgcTgcC11AY.300.000396
ORF1ab/nsp3480A480AgcTgcC11AY.390.000025
ORF1ab/nsp3480A480AgcTgcC11AY.50.000021
ORF1ab/nsp3480A480AgcTgcC11AY.5.40.000277
ORF1ab/nsp3480A480AgcTgcC11AY.540.000095
ORF1ab/nsp3480A480AgcTgcC11AY.60.000041
ORF1ab/nsp3480A480AgcTgcC11AY.610.000105
ORF1ab/nsp3480A480AgcTgcC11AY.9.20.000037
ORF1ab/nsp3480A480AgcTgcC11B.1.1.1180.010204
ORF1ab/nsp3480A480AgcTgcC11B.1.1.700.000341
ORF1ab/nsp3480A480AgcTgcG11B.1.177.820.000477
ORF1ab/nsp3480A480AgcTgcC11B.1.214.10.02
ORF1ab/nsp3480A480AgcTgcC11B.1.214.20.0006
ORF1ab/nsp3480A480AgcTgcG11B.1.258.140.00098
ORF1ab/nsp3480A480AgcTgcC11B.1.4270.00005
ORF1ab/nsp3480A480AgcTgcC11B.1.5510.00129
ORF1ab/nsp3480A480AgcTgcC11B.1.5750.000303
ORF1ab/nsp3480A480AgcTgcG11B.1.5950.000261
ORF1ab/nsp3480A480AgcTgcC11P.20.000187
ORF1ab/nsp3480A480AgcTgcC11Q.10.000126