CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 465 | A465V | A1283V | nonsyn | gCt | gTt | 10035 | 10034 | 0.9999 | 4112-4114 |
ORF1ab/nsp3 | 465 | A465V | A1283V | nonsyn | gCT | gTC | 10035 | 1 | 0.0000996512 | 4112-4114 |
Details of the mutation A465V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 10034 | 10035 | All | 0.001919 |
ORF1ab/nsp3 | 465 | A465V | gCT | gTC | 1 | 10035 | All | 0 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3706 | 3706 | B.1.1.7 | 0.003318 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 566 | 566 | B.1.177.73 | 0.320498 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 488 | 488 | B.1.617.2 | 0.001838 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 373 | 373 | AY.4 | 0.000581 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 306 | 306 | AY.103 | 0.0019 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 289 | 289 | B.1.1.186 | 0.993127 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 260 | 260 | B.1.177 | 0.003424 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 247 | 247 | B.1 | 0.002262 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 188 | 188 | B.1.2 | 0.001655 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 162 | 162 | P.1 | 0.002552 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 141 | 141 | B.1.427 | 0.00712 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 138 | 138 | B.1.526 | 0.003244 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 128 | 128 | AY.25 | 0.00077 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 120 | 120 | C.37 | 0.013928 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 108 | 108 | B.1.1.243 | 0.440816 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 107 | 107 | AY.102 | 0.002837 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 90 | 90 | AY.43 | 0.000399 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 89 | 89 | AY.2 | 0.031695 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 83 | 83 | AY.3 | 0.000826 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 76 | 76 | B.1.258.17 | 0.007902 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 66 | 66 | AY.44 | 0.000402 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 65 | 65 | B.1.1.274 | 0.328283 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 64 | 64 | AY.4.1 | 0.047198 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 58 | 58 | AY.9.2 | 0.00213 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 58 | 58 | B.1.1 | 0.001052 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 57 | 57 | AY.100 | 0.002622 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 56 | 56 | AY.118 | 0.003508 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 54 | 54 | AY.29 | 0.000852 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 54 | 54 | B.1.637 | 0.003946 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 52 | 52 | B.1.243 | 0.003618 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 48 | 48 | AY.39 | 0.001186 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 47 | 47 | AY.120 | 0.001747 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 44 | 44 | AY.75 | 0.002465 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 43 | 43 | B.1.221 | 0.003054 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 42 | 42 | B.1.429 | 0.000988 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 41 | 41 | AY.33 | 0.002738 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 41 | 41 | B.1.619.1 | 0.026299 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 40 | 40 | B.1.351 | 0.001189 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 37 | 37 | Q.8 | 0.006102 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 34 | 34 | P.1.1 | 0.010801 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 31 | 31 | B.1.1.25 | 0.017624 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 30 | 30 | AY.5 | 0.000619 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 30 | 30 | B.1.1.263 | 0.046729 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 29 | 29 | B.1.1.434 | 0.010108 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 29 | 29 | B.1.240 | 0.006251 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 27 | 27 | AY.90 | 0.01848 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 26 | 26 | B.1.160 | 0.000811 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 25 | 25 | AY.47 | 0.000778 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 25 | 25 | B.1.1.483 | 0.961538 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 24 | 24 | AY.117 | 0.002028 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 22 | 22 | B.1.621 | 0.001947 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 21 | 21 | AY.99.2 | 0.001935 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 21 | 21 | B.1.1.196 | 0.12 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 20 | 20 | B.1.517 | 0.00854 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 19 | 19 | B.1.36.36 | 0.011439 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 18 | 18 | A.23.1 | 0.012676 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 18 | 18 | AY.14 | 0.001584 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 18 | 18 | AY.34 | 0.001745 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 18 | 18 | AY.39.1 | 0.000713 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 18 | 18 | P.1.12 | 0.008712 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 17 | 17 | AY.46.3 | 0.015873 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 17 | 17 | B.1.1.46 | 0.074236 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 17 | 17 | B.1.177.4 | 0.003588 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 17 | 17 | P.1.15 | 0.00395 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 16 | 16 | B.1.509 | 0.013853 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 16 | 16 | B.1.596 | 0.001394 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 15 | 15 | B.1.177.60 | 0.003277 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 14 | 14 | AY.106 | 0.004689 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 14 | 14 | AY.53 | 0.004025 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 14 | 14 | B.1.1.519 | 0.000556 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 13 | 13 | B.1.1.33 | 0.005471 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 13 | 13 | B.1.177.16 | 0.008638 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 12 | 12 | A.2.5 | 0.005988 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 12 | 12 | AY.119 | 0.000424 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 12 | 12 | B.1.383 | 0.108108 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 12 | 12 | B.1.586 | 0.131868 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 11 | 11 | AY.120.1 | 0.003531 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 11 | 11 | B.1.258.14 | 0.010784 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 11 | 11 | C.36.3 | 0.006239 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 11 | 11 | Q.1 | 0.00139 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 10 | 10 | B.1.1.50 | 0.006789 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 10 | 10 | B.1.258.24 | 0.107527 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 10 | 10 | B.1.310 | 0.47619 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 10 | 10 | B.1.438.1 | 0.001073 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 9 | 9 | B.1.177.81 | 0.001704 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 9 | 9 | B.1.214.2 | 0.005396 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 8 | 8 | B.1.609 | 0.003835 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 7 | 7 | AY.8 | 0.004242 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 7 | 7 | B.1.1.327 | 0.7 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 6 | 6 | AY.107 | 0.002796 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 6 | 6 | AY.108 | 0.006615 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 6 | 6 | B.1.588 | 0.00546 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 5 | 5 | B.1.160.26 | 0.012107 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 5 | 5 | B.1.36.8 | 0.005 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | B.1.1.231 | 0.012384 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | B.1.1.311 | 0.001433 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | B.1.177.19 | 0.005722 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | B.1.326 | 0.030303 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | B.1.362 | 0.006163 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | B.1.406 | 0.024242 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 4 | 4 | B.1.453 | 0.012945 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | AZ.3 | 0.004559 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | B.1.1.89 | 0.018182 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | B.1.416.1 | 0.004687 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 465 | A465V | gCT | gTC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | AY.115 | 0.010417 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | AY.81 | 0.003984 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.332 | 0.006993 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.428.3 | 0.025641 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.466.1 | 0.014388 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | B.1.78 | 0.017094 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | C.26 | 0.014706 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AD.1 | 0.004115 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.234 | 0.012048 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.105 | 0.009615 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.160.25 | 0.011111 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.421 | 0.007463 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.535 | 0.028571 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 465 | A465V | gCt | gTt | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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