CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A465A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3465A465AA1283AsyngcTgcC3433140.9154524112-4114
ORF1ab/nsp3465A465AA1283AsyngcTgcG343230.06705544112-4114
ORF1ab/nsp3465A465AA1283AsyngcTgcA34360.01749274112-4114

Details of the mutation A465A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3465A465AgcTgcC314343All0.00006
ORF1ab/nsp3465A465AgcTgcG23343All0.000004
ORF1ab/nsp3465A465AgcTgcA6343All0.000001
ORF1ab/nsp3465A465AgcTgcC7174AY.40.000111
ORF1ab/nsp3465A465AgcTgcG374AY.40.000005
ORF1ab/nsp3465A465AgcTgcC5053B.1.1.70.000045
ORF1ab/nsp3465A465AgcTgcG353B.1.1.70.000003
ORF1ab/nsp3465A465AgcTgcC2929AY.430.000128
ORF1ab/nsp3465A465AgcTgcC2525AY.30.000249
ORF1ab/nsp3465A465AgcTgcC2325B.1.617.20.000087
ORF1ab/nsp3465A465AgcTgcG225B.1.617.20.000008
ORF1ab/nsp3465A465AgcTgcC2424B.1.4290.000565
ORF1ab/nsp3465A465AgcTgcC1516B.1.20.000132
ORF1ab/nsp3465A465AgcTgcA116B.1.20.000009
ORF1ab/nsp3465A465AgcTgcC1013AY.250.00006
ORF1ab/nsp3465A465AgcTgcA213AY.250.000012
ORF1ab/nsp3465A465AgcTgcG113AY.250.000006
ORF1ab/nsp3465A465AgcTgcC99AY.440.000055
ORF1ab/nsp3465A465AgcTgcC77A.2.50.003493
ORF1ab/nsp3465A465AgcTgcG24AY.1030.000012
ORF1ab/nsp3465A465AgcTgcC24AY.1030.000012
ORF1ab/nsp3465A465AgcTgcC33AD.20.000657
ORF1ab/nsp3465A465AgcTgcG33AY.460.000312
ORF1ab/nsp3465A465AgcTgcC33B.10.000027
ORF1ab/nsp3465A465AgcTgcC33D.20.000225
ORF1ab/nsp3465A465AgcTgcC23P.10.000032
ORF1ab/nsp3465A465AgcTgcG13P.10.000016
ORF1ab/nsp3465A465AgcTgcC22AY.1020.000053
ORF1ab/nsp3465A465AgcTgcC22AY.46.40.000329
ORF1ab/nsp3465A465AgcTgcC22AY.470.000062
ORF1ab/nsp3465A465AgcTgcC22B.1.1.1590.009346
ORF1ab/nsp3465A465AgcTgcG22B.1.1770.000026
ORF1ab/nsp3465A465AgcTgcC22B.1.1870.066667
ORF1ab/nsp3465A465AgcTgcC22B.1.3980.005952
ORF1ab/nsp3465A465AgcTgcC22B.1.5610.000794
ORF1ab/nsp3465A465AgcTgcC22W.40.002703
ORF1ab/nsp3465A465AgcTgcC110.055556
ORF1ab/nsp3465A465AgcTgcG11AY.1000.000046
ORF1ab/nsp3465A465AgcTgcC11AY.1170.000085
ORF1ab/nsp3465A465AgcTgcC11AY.200.000039
ORF1ab/nsp3465A465AgcTgcC11AY.230.00007
ORF1ab/nsp3465A465AgcTgcC11AY.290.000016
ORF1ab/nsp3465A465AgcTgcC11AY.330.000067
ORF1ab/nsp3465A465AgcTgcG11AY.370.000316
ORF1ab/nsp3465A465AgcTgcC11AY.390.000025
ORF1ab/nsp3465A465AgcTgcC11AY.420.00004
ORF1ab/nsp3465A465AgcTgcA11AY.450.000122
ORF1ab/nsp3465A465AgcTgcA11AY.50.000021
ORF1ab/nsp3465A465AgcTgcC11AY.60.000041
ORF1ab/nsp3465A465AgcTgcC11AY.610.000105
ORF1ab/nsp3465A465AgcTgcC11AY.710.000475
ORF1ab/nsp3465A465AgcTgcC11AY.820.001357
ORF1ab/nsp3465A465AgcTgcC11AY.910.00073
ORF1ab/nsp3465A465AgcTgcC11B.1.10.000018
ORF1ab/nsp3465A465AgcTgcG11B.1.1.1710.003676
ORF1ab/nsp3465A465AgcTgcC11B.1.1.2140.000055
ORF1ab/nsp3465A465AgcTgcG11B.1.1.330.000421
ORF1ab/nsp3465A465AgcTgcC11B.1.1.4090.002833
ORF1ab/nsp3465A465AgcTgcC11B.1.1700.00431
ORF1ab/nsp3465A465AgcTgcC11B.1.177.40.000211
ORF1ab/nsp3465A465AgcTgcA11B.1.3510.00003
ORF1ab/nsp3465A465AgcTgcC11B.1.3750.00082
ORF1ab/nsp3465A465AgcTgcC11B.1.5240.001406
ORF1ab/nsp3465A465AgcTgcG11B.1.6210.000089
ORF1ab/nsp3465A465AgcTgcC11B.1.6370.000073
ORF1ab/nsp3465A465AgcTgcG11B.550.00295
ORF1ab/nsp3465A465AgcTgcC11C.370.000116