CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A41S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp341A41SA859SnonsynGccTcc65610.9384622840-2842
ORF1ab/nsp341A41SA859SnonsynGcCTcA6530.04615382840-2842
ORF1ab/nsp341A41SA859SnonsynGcCTcT6510.01538462840-2842

Details of the mutation A41S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp341A41SGccTcc6165All0.000012
ORF1ab/nsp341A41SGcCTcA365All0.000001
ORF1ab/nsp341A41SGcCTcT165All0
ORF1ab/nsp341A41SGccTcc1313AY.200.000505
ORF1ab/nsp341A41SGccTcc1010B.1.1.70.000009
ORF1ab/nsp341A41SGccTcc580.277778
ORF1ab/nsp341A41SGcCTcA280.111111
ORF1ab/nsp341A41SGcCTcT180.055556
ORF1ab/nsp341A41SGccTcc66AY.40.000009
ORF1ab/nsp341A41SGccTcc33AY.1190.000106
ORF1ab/nsp341A41SGccTcc23B.1.2210.000142
ORF1ab/nsp341A41SGcCTcA13B.1.2210.000071
ORF1ab/nsp341A41SGccTcc33B.1.5680.003333
ORF1ab/nsp341A41SGccTcc33B.1.5700.008824
ORF1ab/nsp341A41SGccTcc22AY.1030.000012
ORF1ab/nsp341A41SGccTcc22AY.1130.000285
ORF1ab/nsp341A41SGccTcc22B.1.1.2160.001781
ORF1ab/nsp341A41SGccTcc22B.1.20.000018
ORF1ab/nsp341A41SGccTcc22B.1.617.20.000008
ORF1ab/nsp341A41SGccTcc11AY.230.00007
ORF1ab/nsp341A41SGccTcc11AY.540.000095
ORF1ab/nsp341A41SGccTcc11AY.980.000079
ORF1ab/nsp341A41SGccTcc11B.1.1770.000013
ORF1ab/nsp341A41SGccTcc11B.1.2580.000067
ORF1ab/nsp341A41SGccTcc11C.260.007353