CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A41A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp341A41AA859AsyngcCgcT867183780.9662092840-2842
ORF1ab/nsp341A41AA859AsyngcCgcA86712850.03286822840-2842
ORF1ab/nsp341A41AA859AsyngcCgcG867180.0009226162840-2842

Details of the mutation A41A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp341A41AgcCgcT83788671All0.001602
ORF1ab/nsp341A41AgcCgcA2858671All0.000055
ORF1ab/nsp341A41AgcCgcG88671All0.000002
ORF1ab/nsp341A41AgcCgcT42954322B.1.1.70.003845
ORF1ab/nsp341A41AgcCgcA264322B.1.1.70.000023
ORF1ab/nsp341A41AgcCgcG14322B.1.1.70.000001
ORF1ab/nsp341A41AgcCgcT13061317AY.40.002033
ORF1ab/nsp341A41AgcCgcA111317AY.40.000017
ORF1ab/nsp341A41AgcCgcT380381B.1.20.003346
ORF1ab/nsp341A41AgcCgcG1381B.1.20.000009
ORF1ab/nsp341A41AgcCgcT329340AY.430.001458
ORF1ab/nsp341A41AgcCgcA11340AY.430.000049
ORF1ab/nsp341A41AgcCgcT123219B.1.617.20.000463
ORF1ab/nsp341A41AgcCgcA96219B.1.617.20.000361
ORF1ab/nsp341A41AgcCgcT179180B.1.4290.004212
ORF1ab/nsp341A41AgcCgcA1180B.1.4290.000024
ORF1ab/nsp341A41AgcCgcT164164AY.1130.023352
ORF1ab/nsp341A41AgcCgcT148158AY.440.000901
ORF1ab/nsp341A41AgcCgcA10158AY.440.000061
ORF1ab/nsp341A41AgcCgcT110113B.1.1770.001448
ORF1ab/nsp341A41AgcCgcG3113B.1.1770.00004
ORF1ab/nsp341A41AgcCgcT98101AY.250.000589
ORF1ab/nsp341A41AgcCgcA3101AY.250.000018
ORF1ab/nsp341A41AgcCgcA7878AY.16.10.036654
ORF1ab/nsp341A41AgcCgcT7171AY.50.001466
ORF1ab/nsp341A41AgcCgcT7071P.10.001103
ORF1ab/nsp341A41AgcCgcG171P.10.000016
ORF1ab/nsp341A41AgcCgcT5867B.10.000531
ORF1ab/nsp341A41AgcCgcA967B.10.000082
ORF1ab/nsp341A41AgcCgcT6263AY.1190.002189
ORF1ab/nsp341A41AgcCgcA163AY.1190.000035
ORF1ab/nsp341A41AgcCgcT4545B.1.4270.002272
ORF1ab/nsp341A41AgcCgcT4444B.1.177.810.00833
ORF1ab/nsp341A41AgcCgcT4041AY.1030.000248
ORF1ab/nsp341A41AgcCgcA141AY.1030.000006
ORF1ab/nsp341A41AgcCgcT3737AY.930.010104
ORF1ab/nsp341A41AgcCgcT3434B.1.4000.014586
ORF1ab/nsp341A41AgcCgcT2930B.1.3510.000862
ORF1ab/nsp341A41AgcCgcA130B.1.3510.00003
ORF1ab/nsp341A41AgcCgcT2627AY.30.000259
ORF1ab/nsp341A41AgcCgcG127AY.30.00001
ORF1ab/nsp341A41AgcCgcT2525P.1.140.001195
ORF1ab/nsp341A41AgcCgcT2324B.1.10.000417
ORF1ab/nsp341A41AgcCgcA124B.1.10.000018
ORF1ab/nsp341A41AgcCgcT2122AY.390.000519
ORF1ab/nsp341A41AgcCgcA122AY.390.000025
ORF1ab/nsp341A41AgcCgcT2222B.1.258.240.236559
ORF1ab/nsp341A41AgcCgcT1821AY.200.0007
ORF1ab/nsp341A41AgcCgcA321AY.200.000117
ORF1ab/nsp341A41AgcCgcT2020B.1.1600.000624
ORF1ab/nsp341A41AgcCgcT1717AY.290.000268
ORF1ab/nsp341A41AgcCgcT1717B.1.2400.003665
ORF1ab/nsp341A41AgcCgcT1416AY.1020.000371
ORF1ab/nsp341A41AgcCgcA216AY.1020.000053
ORF1ab/nsp341A41AgcCgcT1616AY.270.001036
ORF1ab/nsp341A41AgcCgcT1616B.1.5250.001811
ORF1ab/nsp341A41AgcCgcT1515B.1.6210.001328
ORF1ab/nsp341A41AgcCgcT1414AY.1200.000521
ORF1ab/nsp341A41AgcCgcT1414B.1.2360.028747
ORF1ab/nsp341A41AgcCgcT1414B.1.5260.000329
ORF1ab/nsp341A41AgcCgcT1313B.1.1.5190.000516
ORF1ab/nsp341A41AgcCgcT1212AY.240.005172
ORF1ab/nsp341A41AgcCgcT1111B.1.5960.000959
ORF1ab/nsp341A41AgcCgcT1010AY.1180.000626
ORF1ab/nsp341A41AgcCgcT1010B.1.1.3660.15873
ORF1ab/nsp341A41AgcCgcT99AY.4.2.10.001341
ORF1ab/nsp341A41AgcCgcT99AY.4.30.007576
ORF1ab/nsp341A41AgcCgcT99B.1.1.3720.006198
ORF1ab/nsp341A41AgcCgcT99B.1.2410.007305
ORF1ab/nsp341A41AgcCgcT99B.1.415.10.068182
ORF1ab/nsp341A41AgcCgcT78AY.4.20.000152
ORF1ab/nsp341A41AgcCgcA18AY.4.20.000022
ORF1ab/nsp341A41AgcCgcA68AY.540.000572
ORF1ab/nsp341A41AgcCgcT28AY.540.000191
ORF1ab/nsp341A41AgcCgcT88B.1.2430.000557
ORF1ab/nsp341A41AgcCgcT88B.1.5610.003176
ORF1ab/nsp341A41AgcCgcT88B.1.619.10.005131
ORF1ab/nsp341A41AgcCgcT88C.10.019139
ORF1ab/nsp341A41AgcCgcT88C.370.000929
ORF1ab/nsp341A41AgcCgcT77AY.610.000733
ORF1ab/nsp341A41AgcCgcT77B.1.177.90.009321
ORF1ab/nsp341A41AgcCgcT57B.1.2210.000355
ORF1ab/nsp341A41AgcCgcA27B.1.2210.000142
ORF1ab/nsp341A41AgcCgcT77B.1.6280.002467
ORF1ab/nsp341A41AgcCgcT66AY.1060.002009
ORF1ab/nsp341A41AgcCgcT66AY.420.000241
ORF1ab/nsp341A41AgcCgcT66R.10.00054
ORF1ab/nsp341A41AgcCgcT55AY.1000.00023
ORF1ab/nsp341A41AgcCgcA35AY.230.000209
ORF1ab/nsp341A41AgcCgcT25AY.230.000139
ORF1ab/nsp341A41AgcCgcT55AY.260.000142
ORF1ab/nsp341A41AgcCgcT55AY.3.10.000426
ORF1ab/nsp341A41AgcCgcT55AY.99.20.000461
ORF1ab/nsp341A41AgcCgcT55B.1.240.10.125
ORF1ab/nsp341A41AgcCgcT55B.1.617.10.000645
ORF1ab/nsp341A41AgcCgcT55C.260.036765
ORF1ab/nsp341A41AgcCgcT55Q.10.000632
ORF1ab/nsp341A41AgcCgcA340.166667
ORF1ab/nsp341A41AgcCgcT140.055556
ORF1ab/nsp341A41AgcCgcT44AY.1140.000924
ORF1ab/nsp341A41AgcCgcT34AY.130.000483
ORF1ab/nsp341A41AgcCgcA14AY.130.000161
ORF1ab/nsp341A41AgcCgcT44B.1.1.330.001684
ORF1ab/nsp341A41AgcCgcT44B.1.1.700.001364
ORF1ab/nsp341A41AgcCgcT44B.1.2340.000528
ORF1ab/nsp341A41AgcCgcT34B.1.2580.0002
ORF1ab/nsp341A41AgcCgcG14B.1.2580.000067
ORF1ab/nsp341A41AgcCgcT44B.1.760.045455
ORF1ab/nsp341A41AgcCgcT33AY.1010.001471
ORF1ab/nsp341A41AgcCgcT33AY.1210.000406
ORF1ab/nsp341A41AgcCgcT33AY.330.0002
ORF1ab/nsp341A41AgcCgcT33AY.4.10.002212
ORF1ab/nsp341A41AgcCgcT33AY.46.60.000217
ORF1ab/nsp341A41AgcCgcT33AY.740.000347
ORF1ab/nsp341A41AgcCgcT33AY.750.000168
ORF1ab/nsp341A41AgcCgcA33AY.780.004622
ORF1ab/nsp341A41AgcCgcT33B.1.1.280.000934
ORF1ab/nsp341A41AgcCgcT33B.1.1.4860.004732
ORF1ab/nsp341A41AgcCgcT33B.1.177.350.002073
ORF1ab/nsp341A41AgcCgcT33B.1.177.460.002755
ORF1ab/nsp341A41AgcCgcT23B.1.177.600.000437
ORF1ab/nsp341A41AgcCgcA13B.1.177.600.000218
ORF1ab/nsp341A41AgcCgcT33B.1.3060.017143
ORF1ab/nsp341A41AgcCgcT33B.1.3110.000824
ORF1ab/nsp341A41AgcCgcT33B.1.36.290.001552
ORF1ab/nsp341A41AgcCgcT33B.1.438.10.000322
ORF1ab/nsp341A41AgcCgcT33B.1.617.30.008955
ORF1ab/nsp341A41AgcCgcT33M.30.230769
ORF1ab/nsp341A41AgcCgcT33P.20.00056
ORF1ab/nsp341A41AgcCgcT22A.2.50.000998
ORF1ab/nsp341A41AgcCgcT22AE.80.000978
ORF1ab/nsp341A41AgcCgcT22AY.1100.000225
ORF1ab/nsp341A41AgcCgcT12AY.1170.000085
ORF1ab/nsp341A41AgcCgcA12AY.1170.000085
ORF1ab/nsp341A41AgcCgcT22AY.120.2.10.000997
ORF1ab/nsp341A41AgcCgcA12AY.360.000148
ORF1ab/nsp341A41AgcCgcT12AY.360.000148
ORF1ab/nsp341A41AgcCgcT22AY.450.000243
ORF1ab/nsp341A41AgcCgcT22AY.46.20.001271
ORF1ab/nsp341A41AgcCgcT22AY.850.000854
ORF1ab/nsp341A41AgcCgcT22AY.9.10.000167
ORF1ab/nsp341A41AgcCgcT22AY.9.2.10.003953
ORF1ab/nsp341A41AgcCgcT22AY.98.10.000097
ORF1ab/nsp341A41AgcCgcT22B.1.1.2140.000111
ORF1ab/nsp341A41AgcCgcT22B.1.1.2160.001781
ORF1ab/nsp341A41AgcCgcT22B.1.1.2840.000215
ORF1ab/nsp341A41AgcCgcT22B.1.1.3180.000604
ORF1ab/nsp341A41AgcCgcT22B.1.1.3260.003521
ORF1ab/nsp341A41AgcCgcT22B.1.1.4090.005666
ORF1ab/nsp341A41AgcCgcA22B.1.1.4340.000697
ORF1ab/nsp341A41AgcCgcT22B.1.177.210.000153
ORF1ab/nsp341A41AgcCgcT22B.1.177.560.001335
ORF1ab/nsp341A41AgcCgcA22B.1.177.70.00033
ORF1ab/nsp341A41AgcCgcT22B.1.220.002635
ORF1ab/nsp341A41AgcCgcT22B.1.360.000292
ORF1ab/nsp341A41AgcCgcT22B.1.36.190.018519
ORF1ab/nsp341A41AgcCgcT22B.1.3690.00057
ORF1ab/nsp341A41AgcCgcT22B.1.3750.001639
ORF1ab/nsp341A41AgcCgcT22B.1.466.20.000782
ORF1ab/nsp341A41AgcCgcA12B.1.6230.000536
ORF1ab/nsp341A41AgcCgcT12B.1.6230.000536
ORF1ab/nsp341A41AgcCgcT22B.30.001661
ORF1ab/nsp341A41AgcCgcT22B.4.80.142857
ORF1ab/nsp341A41AgcCgcT22P.1.170.000324
ORF1ab/nsp341A41AgcCgcT11AY.1070.000466
ORF1ab/nsp341A41AgcCgcT11AY.1160.000287
ORF1ab/nsp341A41AgcCgcT11AY.120.000316
ORF1ab/nsp341A41AgcCgcT11AY.140.000088
ORF1ab/nsp341A41AgcCgcT11AY.34.10.00051
ORF1ab/nsp341A41AgcCgcT11AY.4.50.000107
ORF1ab/nsp341A41AgcCgcT11AY.460.000104
ORF1ab/nsp341A41AgcCgcT11AY.46.10.001027
ORF1ab/nsp341A41AgcCgcT11AY.46.30.000934
ORF1ab/nsp341A41AgcCgcT11AY.46.40.000165
ORF1ab/nsp341A41AgcCgcT11AY.46.50.000198
ORF1ab/nsp341A41AgcCgcT11AY.470.000031
ORF1ab/nsp341A41AgcCgcT11AY.480.000465
ORF1ab/nsp341A41AgcCgcT11AY.5.30.000337
ORF1ab/nsp341A41AgcCgcT11AY.560.001605
ORF1ab/nsp341A41AgcCgcT11AY.60.000041
ORF1ab/nsp341A41AgcCgcT11AY.670.000464
ORF1ab/nsp341A41AgcCgcT11AY.690.000187
ORF1ab/nsp341A41AgcCgcT11AY.7.10.000113
ORF1ab/nsp341A41AgcCgcT11AY.700.000209
ORF1ab/nsp341A41AgcCgcT11AY.790.001211
ORF1ab/nsp341A41AgcCgcT11AY.9.20.000037
ORF1ab/nsp341A41AgcCgcT11AY.920.000287
ORF1ab/nsp341A41AgcCgcT11AY.980.000079
ORF1ab/nsp341A41AgcCgcT11AY.99.10.001553
ORF1ab/nsp341A41AgcCgcT11AZ.20.000821
ORF1ab/nsp341A41AgcCgcT11B0.000128
ORF1ab/nsp341A41AgcCgcT11B.1.1.100.001115
ORF1ab/nsp341A41AgcCgcT11B.1.1.1420.017544
ORF1ab/nsp341A41AgcCgcT11B.1.1.1570.000913
ORF1ab/nsp341A41AgcCgcT11B.1.1.1650.015385
ORF1ab/nsp341A41AgcCgcT11B.1.1.1720.018182
ORF1ab/nsp341A41AgcCgcT11B.1.1.1740.003378
ORF1ab/nsp341A41AgcCgcT11B.1.1.2220.000204
ORF1ab/nsp341A41AgcCgcT11B.1.1.250.000569
ORF1ab/nsp341A41AgcCgcT11B.1.1.270.00565
ORF1ab/nsp341A41AgcCgcT11B.1.1.2970.002237
ORF1ab/nsp341A41AgcCgcT11B.1.1.3060.000438
ORF1ab/nsp341A41AgcCgcT11B.1.1.3160.000925
ORF1ab/nsp341A41AgcCgcT11B.1.1.3690.000446
ORF1ab/nsp341A41AgcCgcT11B.1.1.4120.007634
ORF1ab/nsp341A41AgcCgcT11B.1.1.4320.001266
ORF1ab/nsp341A41AgcCgcT11B.1.1.500.000679
ORF1ab/nsp341A41AgcCgcT11B.1.1.5260.003546
ORF1ab/nsp341A41AgcCgcT11B.1.1.630.000386
ORF1ab/nsp341A41AgcCgcT11B.1.1.830.00271
ORF1ab/nsp341A41AgcCgcT11B.1.1.990.02381
ORF1ab/nsp341A41AgcCgcT11B.1.1460.004237
ORF1ab/nsp341A41AgcCgcT11B.1.1570.002985
ORF1ab/nsp341A41AgcCgcT11B.1.160.160.000929
ORF1ab/nsp341A41AgcCgcT11B.1.177.570.000281
ORF1ab/nsp341A41AgcCgcT11B.1.177.770.000726
ORF1ab/nsp341A41AgcCgcT11B.1.177.800.001912
ORF1ab/nsp341A41AgcCgcT11B.1.177.880.012346
ORF1ab/nsp341A41AgcCgcT11B.1.2380.014925
ORF1ab/nsp341A41AgcCgcT11B.1.258.170.000104
ORF1ab/nsp341A41AgcCgcT11B.1.2650.001271
ORF1ab/nsp341A41AgcCgcT11B.1.3460.001311
ORF1ab/nsp341A41AgcCgcT11B.1.351.20.000303
ORF1ab/nsp341A41AgcCgcT11B.1.3560.001727
ORF1ab/nsp341A41AgcCgcT11B.1.36.100.004785
ORF1ab/nsp341A41AgcCgcT11B.1.36.180.00042
ORF1ab/nsp341A41AgcCgcT11B.1.36.270.000763
ORF1ab/nsp341A41AgcCgcT11B.1.36.360.000602
ORF1ab/nsp341A41AgcCgcT11B.1.3610.001289
ORF1ab/nsp341A41AgcCgcT11B.1.4110.003704
ORF1ab/nsp341A41AgcCgcT11B.1.4360.001029
ORF1ab/nsp341A41AgcCgcA11B.1.4390.005917
ORF1ab/nsp341A41AgcCgcT11B.1.4970.000315
ORF1ab/nsp341A41AgcCgcT11B.1.4990.00105
ORF1ab/nsp341A41AgcCgcT11B.1.5090.000866
ORF1ab/nsp341A41AgcCgcT11B.1.5160.001957
ORF1ab/nsp341A41AgcCgcT11B.1.5170.000427
ORF1ab/nsp341A41AgcCgcT11B.1.5380.008065
ORF1ab/nsp341A41AgcCgcT11B.1.5910.010638
ORF1ab/nsp341A41AgcCgcT11B.1.6010.030303
ORF1ab/nsp341A41AgcCgcT11B.400.000364
ORF1ab/nsp341A41AgcCgcT11B.580.010204
ORF1ab/nsp341A41AgcCgcT11C.140.004329
ORF1ab/nsp341A41AgcCgcT11C.160.00106
ORF1ab/nsp341A41AgcCgcA11C.180.002591
ORF1ab/nsp341A41AgcCgcT11C.270.018519
ORF1ab/nsp341A41AgcCgcT11K.30.006173
ORF1ab/nsp341A41AgcCgcT11N.50.001767
ORF1ab/nsp341A41AgcCgcT11P.1.150.000232
ORF1ab/nsp341A41AgcCgcA11P.1.70.000319
ORF1ab/nsp341A41AgcCgcT11P.30.001595
ORF1ab/nsp341A41AgcCgcT11P.70.004367
ORF1ab/nsp341A41AgcCgcT11Q.80.000165
ORF1ab/nsp341A41AgcCgcT11W.40.001351
ORF1ab/nsp341A41AgcCgcT11Z.10.00289