CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A328T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3328A328TA1146TnonsynGcaAca337733710.9982233701-3703
ORF1ab/nsp3328A328TA1146TnonsynGcAAcT337730.0008883623701-3703
ORF1ab/nsp3328A328TA1146TnonsynGcAAcC337720.0005922423701-3703
ORF1ab/nsp3328A328TA1146TnonsynGcAAcG337710.0002961213701-3703

Details of the mutation A328T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3328A328TGcaAca33713377All0.000645
ORF1ab/nsp3328A328TGcAAcT33377All0.000001
ORF1ab/nsp3328A328TGcAAcC23377All0
ORF1ab/nsp3328A328TGcAAcG13377All0
ORF1ab/nsp3328A328TGcaAca27742774AY.20.987892
ORF1ab/nsp3328A328TGcaAca8888B.1.4270.004444
ORF1ab/nsp3328A328TGcaAca6969AY.930.018842
ORF1ab/nsp3328A328TGcaAca6363B.1.617.20.000237
ORF1ab/nsp3328A328TGcaAca5151AY.1030.000317
ORF1ab/nsp3328A328TGcaAca3636AY.710.017102
ORF1ab/nsp3328A328TGcaAca3232B.1.1.70.000029
ORF1ab/nsp3328A328TGcaAca2222AY.620.009586
ORF1ab/nsp3328A328TGcaAca2020AY.440.000122
ORF1ab/nsp3328A328TGcaAca1717AY.40.000026
ORF1ab/nsp3328A328TGcaAca1313AY.370.004109
ORF1ab/nsp3328A328TGcaAca1313AY.380.00649
ORF1ab/nsp3328A328TGcaAca1212AY.10.004749
ORF1ab/nsp3328A328TGcaAca1010AY.250.00006
ORF1ab/nsp3328A328TGcaAca99AY.30.00009
ORF1ab/nsp3328A328TGcaAca99B.1.20.000079
ORF1ab/nsp3328A328TGcAAcT360.166667
ORF1ab/nsp3328A328TGcAAcC260.111111
ORF1ab/nsp3328A328TGcaAca160.055556
ORF1ab/nsp3328A328TGcaAca66AY.650.003198
ORF1ab/nsp3328A328TGcaAca66AY.750.000336
ORF1ab/nsp3328A328TGcaAca66AY.75.10.001082
ORF1ab/nsp3328A328TGcaAca66P.10.000095
ORF1ab/nsp3328A328TGcaAca55AY.430.000022
ORF1ab/nsp3328A328TGcaAca55AY.470.000156
ORF1ab/nsp3328A328TGcaAca55AY.610.000524
ORF1ab/nsp3328A328TGcaAca55B.1.2430.000348
ORF1ab/nsp3328A328TGcaAca44AY.100.00212
ORF1ab/nsp3328A328TGcaAca44AY.1110.000733
ORF1ab/nsp3328A328TGcaAca44AY.1180.000251
ORF1ab/nsp3328A328TGcaAca44AY.330.000267
ORF1ab/nsp3328A328TGcaAca44B.1.10.000073
ORF1ab/nsp3328A328TGcaAca44B.1.5260.000094
ORF1ab/nsp3328A328TGcaAca33AY.1020.00008
ORF1ab/nsp3328A328TGcaAca33AY.16.10.00141
ORF1ab/nsp3328A328TGcaAca33AY.520.002443
ORF1ab/nsp3328A328TGcaAca33AY.9.10.000251
ORF1ab/nsp3328A328TGcaAca33B.10.000027
ORF1ab/nsp3328A328TGcaAca33B.1.177.590.048387
ORF1ab/nsp3328A328TGcaAca22AY.1060.00067
ORF1ab/nsp3328A328TGcaAca22AY.1200.000074
ORF1ab/nsp3328A328TGcaAca22AY.130.000322
ORF1ab/nsp3328A328TGcaAca22AY.190.002281
ORF1ab/nsp3328A328TGcaAca22AY.590.001059
ORF1ab/nsp3328A328TGcaAca22AY.860.00166
ORF1ab/nsp3328A328TGcaAca22B.1.1.2860.005797
ORF1ab/nsp3328A328TGcaAca11A0.000387
ORF1ab/nsp3328A328TGcaAca11AY.1100.000113
ORF1ab/nsp3328A328TGcaAca11AY.1160.000287
ORF1ab/nsp3328A328TGcaAca11AY.1190.000035
ORF1ab/nsp3328A328TGcaAca11AY.120.20.001285
ORF1ab/nsp3328A328TGcaAca11AY.160.00038
ORF1ab/nsp3328A328TGcaAca11AY.290.000016
ORF1ab/nsp3328A328TGcaAca11AY.390.000025
ORF1ab/nsp3328A328TGcaAca11AY.39.10.00004
ORF1ab/nsp3328A328TGcaAca11AY.410.000294
ORF1ab/nsp3328A328TGcaAca11AY.46.20.000635
ORF1ab/nsp3328A328TGcaAca11AY.560.001605
ORF1ab/nsp3328A328TGcaAca11AY.600.000938
ORF1ab/nsp3328A328TGcaAca11AY.670.000464
ORF1ab/nsp3328A328TGcaAca11AY.730.000665
ORF1ab/nsp3328A328TGcaAca11AY.870.000833
ORF1ab/nsp3328A328TGcaAca11AY.90.000068
ORF1ab/nsp3328A328TGcaAca11AY.9.20.000037
ORF1ab/nsp3328A328TGcaAca11AY.940.000443
ORF1ab/nsp3328A328TGcaAca11AY.98.10.000048
ORF1ab/nsp3328A328TGcaAca11B.1.1.280.000311
ORF1ab/nsp3328A328TGcaAca11B.1.1.330.000421
ORF1ab/nsp3328A328TGcaAca11B.1.1770.000013
ORF1ab/nsp3328A328TGcaAca11B.1.177.230.003236
ORF1ab/nsp3328A328TGcaAca11B.1.177.520.001757
ORF1ab/nsp3328A328TGcAAcG11B.1.2340.000132
ORF1ab/nsp3328A328TGcaAca11B.1.2580.000067
ORF1ab/nsp3328A328TGcaAca11B.1.4290.000024
ORF1ab/nsp3328A328TGcaAca11B.1.6230.000536
ORF1ab/nsp3328A328TGcaAca11B.1.6370.000073
ORF1ab/nsp3328A328TGcaAca11C.370.000116
ORF1ab/nsp3328A328TGcaAca11P.1.140.000048
ORF1ab/nsp3328A328TGcaAca11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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