CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A328A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3328A328AA1146AsyngcAgcC4022010.53701-3703
ORF1ab/nsp3328A328AA1146AsyngcAgcG4021880.4676623701-3703
ORF1ab/nsp3328A328AA1146AsyngcAgcT402130.03233833701-3703

Details of the mutation A328A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3328A328AgcAgcC201402All0.000038
ORF1ab/nsp3328A328AgcAgcG188402All0.000036
ORF1ab/nsp3328A328AgcAgcT13402All0.000002
ORF1ab/nsp3328A328AgcAgcC190190B.1.221.30.158333
ORF1ab/nsp3328A328AgcAgcG9191AY.1030.000565
ORF1ab/nsp3328A328AgcAgcG3334AY.430.000146
ORF1ab/nsp3328A328AgcAgcC134AY.430.000004
ORF1ab/nsp3328A328AgcAgcG1014B.1.617.20.000038
ORF1ab/nsp3328A328AgcAgcT414B.1.617.20.000015
ORF1ab/nsp3328A328AgcAgcG1212AY.1020.000318
ORF1ab/nsp3328A328AgcAgcG99AY.250.000054
ORF1ab/nsp3328A328AgcAgcG88B.1.1.70.000007
ORF1ab/nsp3328A328AgcAgcG36AY.40.000005
ORF1ab/nsp3328A328AgcAgcT36AY.40.000005
ORF1ab/nsp3328A328AgcAgcC44B.1.1.250.002274
ORF1ab/nsp3328A328AgcAgcT230.111111
ORF1ab/nsp3328A328AgcAgcC130.055556
ORF1ab/nsp3328A328AgcAgcG23AY.390.000049
ORF1ab/nsp3328A328AgcAgcT13AY.390.000025
ORF1ab/nsp3328A328AgcAgcC23B.10.000018
ORF1ab/nsp3328A328AgcAgcG13B.10.000009
ORF1ab/nsp3328A328AgcAgcG22AY.1060.00067
ORF1ab/nsp3328A328AgcAgcC12AY.1190.000035
ORF1ab/nsp3328A328AgcAgcG12AY.1190.000035
ORF1ab/nsp3328A328AgcAgcT12B.1.1.4090.002833
ORF1ab/nsp3328A328AgcAgcC12B.1.1.4090.002833
ORF1ab/nsp3328A328AgcAgcG12C.370.000116
ORF1ab/nsp3328A328AgcAgcT12C.370.000116
ORF1ab/nsp3328A328AgcAgcT11A.10.000282
ORF1ab/nsp3328A328AgcAgcG11AY.1000.000046
ORF1ab/nsp3328A328AgcAgcG11AY.110.001339
ORF1ab/nsp3328A328AgcAgcG11AY.30.00001
ORF1ab/nsp3328A328AgcAgcG11AY.46.60.000072
ORF1ab/nsp3328A328AgcAgcG11AY.470.000031
ORF1ab/nsp3328A328AgcAgcG11AY.680.000274
ORF1ab/nsp3328A328AgcAgcG11B.1.10.000018
ORF1ab/nsp3328A328AgcAgcG11B.1.1.1410.002012
ORF1ab/nsp3328A328AgcAgcG11B.1.1.1700.001247
ORF1ab/nsp3328A328AgcAgcG11B.1.1.2840.000107
ORF1ab/nsp3328A328AgcAgcG11B.1.1.4340.000349
ORF1ab/nsp3328A328AgcAgcG11B.1.1770.000013
ORF1ab/nsp3328A328AgcAgcG11B.1.20.000009
ORF1ab/nsp3328A328AgcAgcC11B.1.2210.000071
ORF1ab/nsp3328A328AgcAgcG11B.1.5010.007353
ORF1ab/nsp3328A328AgcAgcG11B.1.5650.00081

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.